BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029373
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   214   8e-54
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...   212   3e-53
gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indi...   212   3e-53
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su...   211   4e-53
ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II su...   211   4e-53

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score =  214 bits (544), Expect = 8e-54
 Identities = 104/121 (85%), Positives = 114/121 (94%)
 Frame = -2

Query: 363  IWNAQKTFKVDLRRPSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLH 184
            IWNAQKTFKVDLRRPSDMHP EIVEAV++LQERLKVVPG+D +S+EAQKNATL FNILL 
Sbjct: 983  IWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLR 1042

Query: 183  STLASKRVLNEYRLTREAFDWIIGEIESRFLQSIVATGEMVGCVAAQSVGEPATQMTLNT 4
            ST ASKRVL EYRLTREAF+W+IGEIESRFLQS+VA GEM+GCVAAQS+GEPATQMTLNT
Sbjct: 1043 STFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1102

Query: 3    F 1
            F
Sbjct: 1103 F 1103


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score =  212 bits (539), Expect = 3e-53
 Identities = 101/121 (83%), Positives = 114/121 (94%)
 Frame = -2

Query: 363  IWNAQKTFKVDLRRPSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLH 184
            IWNAQKTFK+DLRRPSDMHP EIVEA+++LQERLKVVPG+D +S+EAQKNATL FNILL 
Sbjct: 654  IWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 713

Query: 183  STLASKRVLNEYRLTREAFDWIIGEIESRFLQSIVATGEMVGCVAAQSVGEPATQMTLNT 4
            ST ASKRVL EYRLT+EAF+W+IGEIESRFLQS+VA GEM+GCVAAQS+GEPATQMTLNT
Sbjct: 714  STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 773

Query: 3    F 1
            F
Sbjct: 774  F 774


>gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score =  212 bits (539), Expect = 3e-53
 Identities = 101/121 (83%), Positives = 114/121 (94%)
 Frame = -2

Query: 363  IWNAQKTFKVDLRRPSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLH 184
            IWNAQKTFK+DLRRPSDMHP EIVEA+++LQERLKVVPG+D +S+EAQKNATL FNILL 
Sbjct: 953  IWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLR 1012

Query: 183  STLASKRVLNEYRLTREAFDWIIGEIESRFLQSIVATGEMVGCVAAQSVGEPATQMTLNT 4
            ST ASKRVL EYRLT+EAF+W+IGEIESRFLQS+VA GEM+GCVAAQS+GEPATQMTLNT
Sbjct: 1013 STFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1072

Query: 3    F 1
            F
Sbjct: 1073 F 1073


>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score =  211 bits (538), Expect = 4e-53
 Identities = 102/121 (84%), Positives = 113/121 (93%)
 Frame = -2

Query: 363  IWNAQKTFKVDLRRPSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLH 184
            IWNAQKTFKVD RRPSDMHP EIVEA+++LQERLKVVPG D LS EAQKNATLLFNILL 
Sbjct: 983  IWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLR 1042

Query: 183  STLASKRVLNEYRLTREAFDWIIGEIESRFLQSIVATGEMVGCVAAQSVGEPATQMTLNT 4
            ST ASKRVL EYRL+REAF+W++GEIESRFLQS+VA+GEM+GCVAAQS+GEPATQMTLNT
Sbjct: 1043 STFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNT 1102

Query: 3    F 1
            F
Sbjct: 1103 F 1103


>ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score =  211 bits (538), Expect = 4e-53
 Identities = 102/121 (84%), Positives = 113/121 (93%)
 Frame = -2

Query: 363  IWNAQKTFKVDLRRPSDMHPNEIVEAVERLQERLKVVPGNDFLSVEAQKNATLLFNILLH 184
            IWNAQKTFKVD RRPSDMHP EIVEA+++LQERLKVVPG D LS EAQKNATLLFNILL 
Sbjct: 983  IWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLR 1042

Query: 183  STLASKRVLNEYRLTREAFDWIIGEIESRFLQSIVATGEMVGCVAAQSVGEPATQMTLNT 4
            ST ASKRVL EYRL+REAF+W++GEIESRFLQS+VA+GEM+GCVAAQS+GEPATQMTLNT
Sbjct: 1043 STFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNT 1102

Query: 3    F 1
            F
Sbjct: 1103 F 1103