BLASTX nr result

ID: Coptis24_contig00029368 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029368
         (642 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002307558.1| predicted protein [Populus trichocarpa] gi|2...   211   7e-53
ref|XP_002300871.1| predicted protein [Populus trichocarpa] gi|2...   208   6e-52
ref|XP_002272948.1| PREDICTED: uncharacterized protein LOC100248...   203   2e-50
emb|CAN70161.1| hypothetical protein VITISV_030020 [Vitis vinifera]   203   2e-50
emb|CBI30855.3| unnamed protein product [Vitis vinifera]              203   3e-50

>ref|XP_002307558.1| predicted protein [Populus trichocarpa] gi|222857007|gb|EEE94554.1|
           predicted protein [Populus trichocarpa]
          Length = 247

 Score =  211 bits (538), Expect = 7e-53
 Identities = 95/146 (65%), Positives = 124/146 (84%), Gaps = 1/146 (0%)
 Frame = -3

Query: 583 MLSVLLATAGAVMSIKNFENAFNNNHQRIGVGLYGIIWVQALIGFLRPRRGSIQRSMWFF 404
           MLSVLL+TAGAVMSIKNF N+F+N+HQRIGVGLYGI+W+QAL G LRPRRGS  RS+WFF
Sbjct: 96  MLSVLLSTAGAVMSIKNFNNSFDNHHQRIGVGLYGIVWLQALTGLLRPRRGSKGRSLWFF 155

Query: 403 AHWLSGTAITVLGIMNVYTGLQAYHRRTYKSVKLWSTLFTAEICLIVFLYLFQDKWDYLK 224
            HW++GTA+++LGI+++YTGLQAYH++T +S+ LW+ +FT E+  I+F YLFQDKW Y++
Sbjct: 156 VHWITGTAVSLLGIISIYTGLQAYHQKTSRSIHLWTIVFTTEVSFIIFFYLFQDKWVYIQ 215

Query: 223 KQGVILGSEPVKP-ESVSLHGENQKD 149
           KQGVILG EPV+P   V   GE +++
Sbjct: 216 KQGVILGDEPVRPTHQVICPGEKKRE 241


>ref|XP_002300871.1| predicted protein [Populus trichocarpa] gi|222842597|gb|EEE80144.1|
           predicted protein [Populus trichocarpa]
          Length = 269

 Score =  208 bits (530), Expect = 6e-52
 Identities = 96/145 (66%), Positives = 122/145 (84%), Gaps = 1/145 (0%)
 Frame = -3

Query: 583 MLSVLLATAGAVMSIKNFENAFNNNHQRIGVGLYGIIWVQALIGFLRPRRGSIQRSMWFF 404
           MLSVLL+TAGAVMSIKNF N+F+N+HQRIGVGLYG++W+QALIGFLRPRRGS  R +WFF
Sbjct: 120 MLSVLLSTAGAVMSIKNFNNSFDNHHQRIGVGLYGMVWLQALIGFLRPRRGSKGRGLWFF 179

Query: 403 AHWLSGTAITVLGIMNVYTGLQAYHRRTYKSVKLWSTLFTAEICLIVFLYLFQDKWDYLK 224
            HW++GTA+++LGI+NVYTGLQAYH++T + + +W+ +FT E+  I+F YLFQDKWDY+ 
Sbjct: 180 VHWITGTAVSLLGIVNVYTGLQAYHQKTSRRIHIWTIVFTTEVSFIIFFYLFQDKWDYIH 239

Query: 223 KQGVILGSEPVKP-ESVSLHGENQK 152
           KQGVIL  EP++P   V   GE QK
Sbjct: 240 KQGVIL--EPLRPTHQVISPGEKQK 262


>ref|XP_002272948.1| PREDICTED: uncharacterized protein LOC100248593 [Vitis vinifera]
          Length = 529

 Score =  203 bits (517), Expect = 2e-50
 Identities = 88/148 (59%), Positives = 121/148 (81%)
 Frame = -3

Query: 583 MLSVLLATAGAVMSIKNFENAFNNNHQRIGVGLYGIIWVQALIGFLRPRRGSIQRSMWFF 404
           +LSVL+ATAGA+MSIKNFEN+FNN HQRIG+ LYG IWVQALIGF RP R S  RS+W+F
Sbjct: 102 VLSVLIATAGAIMSIKNFENSFNNYHQRIGLALYGAIWVQALIGFCRPGRRSKGRSVWYF 161

Query: 403 AHWLSGTAITVLGIMNVYTGLQAYHRRTYKSVKLWSTLFTAEICLIVFLYLFQDKWDYLK 224
            HW+ GT ++V+G++N+YTGL+AY ++T +S++LW+ LFTAE+CL+ F YLFQDKW+Y++
Sbjct: 162 VHWILGTTVSVVGMINIYTGLEAYQKKTSRSIRLWTVLFTAEVCLMAFFYLFQDKWEYMQ 221

Query: 223 KQGVILGSEPVKPESVSLHGENQKDLEQ 140
           KQGVI+G+E V P    +  + +  L++
Sbjct: 222 KQGVIMGNEAVTPSDQVIPTQRENSLKE 249


>emb|CAN70161.1| hypothetical protein VITISV_030020 [Vitis vinifera]
          Length = 909

 Score =  203 bits (517), Expect = 2e-50
 Identities = 88/148 (59%), Positives = 121/148 (81%)
 Frame = -3

Query: 583 MLSVLLATAGAVMSIKNFENAFNNNHQRIGVGLYGIIWVQALIGFLRPRRGSIQRSMWFF 404
           +LSVL+ATAGA+MSIKNFEN+FNN HQRIG+ LYG IWVQALIGF RP R S  RS+W+F
Sbjct: 99  VLSVLIATAGAIMSIKNFENSFNNYHQRIGLALYGAIWVQALIGFCRPGRRSKGRSVWYF 158

Query: 403 AHWLSGTAITVLGIMNVYTGLQAYHRRTYKSVKLWSTLFTAEICLIVFLYLFQDKWDYLK 224
            HW+ GT ++V+G++N+YTGL+AY ++T +S++LW+ LFTAE+CL+ F YLFQDKW+Y++
Sbjct: 159 VHWILGTTVSVVGMINIYTGLEAYQKKTSRSIRLWTVLFTAEVCLMAFFYLFQDKWEYMQ 218

Query: 223 KQGVILGSEPVKPESVSLHGENQKDLEQ 140
           KQGVI+G+E V P    +  + +  L++
Sbjct: 219 KQGVIMGNEAVTPSDQVIPTQRENSLKE 246


>emb|CBI30855.3| unnamed protein product [Vitis vinifera]
          Length = 521

 Score =  203 bits (516), Expect = 3e-50
 Identities = 91/149 (61%), Positives = 124/149 (83%)
 Frame = -3

Query: 583 MLSVLLATAGAVMSIKNFENAFNNNHQRIGVGLYGIIWVQALIGFLRPRRGSIQRSMWFF 404
           +LSVL+ATAGA+MSIKNFEN+FNN HQRIG+ LYG IWVQALIGF RP R S  RS+W+F
Sbjct: 51  VLSVLIATAGAIMSIKNFENSFNNYHQRIGLALYGAIWVQALIGFCRPGRRSKGRSVWYF 110

Query: 403 AHWLSGTAITVLGIMNVYTGLQAYHRRTYKSVKLWSTLFTAEICLIVFLYLFQDKWDYLK 224
            HW+ GT ++V+G++N+YTGL+AY ++T +S++LW+ LFTAE+CL+ F YLFQDKW+Y++
Sbjct: 111 VHWILGTTVSVVGMINIYTGLEAYQKKTSRSIRLWTVLFTAEVCLMAFFYLFQDKWEYMQ 170

Query: 223 KQGVILGSEPVKPESVSLHGENQKDLEQR 137
           KQGVI+G+E V P S  ++G   + LE++
Sbjct: 171 KQGVIMGNEAVTP-SDQVNGLELRILEEK 198


Top