BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029329
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...   193   1e-47
ref|NP_001241137.1| ribulose bisphosphate carboxylase small chai...   193   1e-47
ref|NP_001235266.1| ribulose-1,5-bisphosphate carboxylase small ...   193   1e-47
gb|AFK42721.1| unknown [Lotus japonicus]                              193   1e-47
ref|NP_001235314.1| uncharacterized protein LOC100500504 [Glycin...   193   1e-47

>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
           domestica x Pyrus communis]
          Length = 179

 Score =  193 bits (491), Expect = 1e-47
 Identities = 88/97 (90%), Positives = 92/97 (94%)
 Frame = -2

Query: 433 LAREVDYLLRKGWVPCLEFELEKGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 254
           LA+EVDYLLRK WVPCLEFELE GFVYRENNRSPGYYDGRYWTMWKLPMFGCTDS+QVLK
Sbjct: 82  LAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSSQVLK 141

Query: 253 ELEEAVKAYPNGFIRIIGFDNVRQVQCISFIAHRPPG 143
           ELEEA KAYP  FIRIIGFDNVRQVQCISFIA++PPG
Sbjct: 142 ELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPPG 178


>ref|NP_001241137.1| ribulose bisphosphate carboxylase small chain 1, chloroplastic-like
           [Glycine max] gi|10946375|gb|AAG24882.1|AF303939_1
           ribulose-1,5-bisphosphate carboxylase small subunit
           rbcS1 [Glycine max] gi|1055368|gb|AAA81328.1|
           ribulose-1,5-bisphosphate carboxylase small subunit
           [Glycine max]
          Length = 178

 Score =  193 bits (490), Expect = 1e-47
 Identities = 85/98 (86%), Positives = 95/98 (96%)
 Frame = -2

Query: 433 LAREVDYLLRKGWVPCLEFELEKGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 254
           LA+EV+YLLRKGW+PCLEFELE GFVYRE+NRSPGYYDGRYWTMWKLPMFGCTD++QVLK
Sbjct: 81  LAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLK 140

Query: 253 ELEEAVKAYPNGFIRIIGFDNVRQVQCISFIAHRPPGY 140
           EL+EA  AYPNGFIRIIGFDNVRQVQCISFIA++PPG+
Sbjct: 141 ELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


>ref|NP_001235266.1| ribulose-1,5-bisphosphate carboxylase small subunit rbcS2 [Glycine
           max] gi|10946377|gb|AAG24883.1|AF303940_1
           ribulose-1,5-bisphosphate carboxylase small subunit
           rbcS2 [Glycine max]
          Length = 178

 Score =  193 bits (490), Expect = 1e-47
 Identities = 85/98 (86%), Positives = 95/98 (96%)
 Frame = -2

Query: 433 LAREVDYLLRKGWVPCLEFELEKGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 254
           LA+EV+YLLRKGW+PCLEFELE GFVYRE+NRSPGYYDGRYWTMWKLPMFGCTD++QVLK
Sbjct: 81  LAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLK 140

Query: 253 ELEEAVKAYPNGFIRIIGFDNVRQVQCISFIAHRPPGY 140
           EL+EA  AYPNGFIRIIGFDNVRQVQCISFIA++PPG+
Sbjct: 141 ELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


>gb|AFK42721.1| unknown [Lotus japonicus]
          Length = 182

 Score =  193 bits (490), Expect = 1e-47
 Identities = 85/98 (86%), Positives = 94/98 (95%)
 Frame = -2

Query: 433 LAREVDYLLRKGWVPCLEFELEKGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 254
           L +EV+YLLRKGWVPCLEFE EKGFVYREN++SPGYYDGRYWTMWKLPMFGC+D+AQVLK
Sbjct: 85  LLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDAAQVLK 144

Query: 253 ELEEAVKAYPNGFIRIIGFDNVRQVQCISFIAHRPPGY 140
           EL+EAV+AYPN F+RIIGFDNVRQVQCISFIAHRP GY
Sbjct: 145 ELDEAVRAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 182


>ref|NP_001235314.1| uncharacterized protein LOC100500504 [Glycine max]
           gi|255630492|gb|ACU15604.1| unknown [Glycine max]
          Length = 178

 Score =  193 bits (490), Expect = 1e-47
 Identities = 85/98 (86%), Positives = 95/98 (96%)
 Frame = -2

Query: 433 LAREVDYLLRKGWVPCLEFELEKGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSAQVLK 254
           LA+EV+YLLRKGW+PCLEFELE GFVYRE+NRSPGYYDGRYWTMWKLPMFGCTD++QVLK
Sbjct: 81  LAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLK 140

Query: 253 ELEEAVKAYPNGFIRIIGFDNVRQVQCISFIAHRPPGY 140
           EL+EA  AYPNGFIRIIGFDNVRQVQCISFIA++PPG+
Sbjct: 141 ELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178