BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029300
         (273 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   126   2e-27
ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-li...   125   4e-27
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   119   2e-25
gb|AEL99203.1| DNA polymerase alpha subunit B family protein, pa...   118   6e-25
dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]    115   4e-24

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  126 bits (316), Expect = 2e-27
 Identities = 63/88 (71%), Positives = 69/88 (78%)
 Frame = +2

Query: 5   DSFPISVSPDVEFPPAKKQAMDHEFQPNSPSSTPKKLSLVIAAGPFTTTDNLLFEPLVEL 184
           DS P+S   DV+  PAKKQA D EFQ    S    +LSL++AAGPFTTTDNLLFEPL EL
Sbjct: 322 DSIPVSAPTDVDLHPAKKQARDEEFQSADSSHKLAELSLMVAAGPFTTTDNLLFEPLTEL 381

Query: 185 LAYATRKQPQLLMLLGPFVDSEHPEIRK 268
           LAYA RK PQLL+LLGPFVDSEHPEIRK
Sbjct: 382 LAYARRKMPQLLILLGPFVDSEHPEIRK 409


>ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus]
           gi|449486914|ref|XP_004157440.1| PREDICTED: DNA
           polymerase alpha subunit B-like [Cucumis sativus]
          Length = 622

 Score =  125 bits (314), Expect = 4e-27
 Identities = 59/88 (67%), Positives = 74/88 (84%)
 Frame = +2

Query: 5   DSFPISVSPDVEFPPAKKQAMDHEFQPNSPSSTPKKLSLVIAAGPFTTTDNLLFEPLVEL 184
           DSFP+S + D   PPAKK A++H+ QP + SSTP +LS++IA+GP+TTTDNLLFEPL EL
Sbjct: 322 DSFPLSATIDPILPPAKKIALNHDIQPINQSSTPSELSMIIASGPYTTTDNLLFEPLTEL 381

Query: 185 LAYATRKQPQLLMLLGPFVDSEHPEIRK 268
           LAYA RK PQLL+LLGPFVDSEH +I++
Sbjct: 382 LAYAKRKVPQLLILLGPFVDSEHSDIKR 409


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score =  119 bits (299), Expect = 2e-25
 Identities = 58/88 (65%), Positives = 72/88 (81%)
 Frame = +2

Query: 5   DSFPISVSPDVEFPPAKKQAMDHEFQPNSPSSTPKKLSLVIAAGPFTTTDNLLFEPLVEL 184
           DS P+S +PD   PPAKKQA+D E +    S T +++S++IA+GPFTT DNL+FEPL EL
Sbjct: 321 DSIPLSAAPDGNLPPAKKQALDQEIESIGSSCT-QEISVLIASGPFTTLDNLMFEPLTEL 379

Query: 185 LAYATRKQPQLLMLLGPFVDSEHPEIRK 268
           LAYA+RK PQLL+LLGPFVDSEHPEI+K
Sbjct: 380 LAYASRKLPQLLILLGPFVDSEHPEIKK 407


>gb|AEL99203.1| DNA polymerase alpha subunit B family protein, partial [Silene
           latifolia]
          Length = 315

 Score =  118 bits (295), Expect = 6e-25
 Identities = 57/87 (65%), Positives = 67/87 (77%)
 Frame = +2

Query: 5   DSFPISVSPDVEFPPAKKQAMDHEFQPNSPSSTPKKLSLVIAAGPFTTTDNLLFEPLVEL 184
           D  P   S D +  P K+QA+D +  P+  S  P +LS++IAAGPFTTTDNL FEPL EL
Sbjct: 229 DLIPFPASSDCDLHPVKRQAVDEDGLPSLQSPAPSELSVIIAAGPFTTTDNLFFEPLSEL 288

Query: 185 LAYATRKQPQLLMLLGPFVDSEHPEIR 265
           LAYA+RKQPQLL+LLGPFVDSEHPEIR
Sbjct: 289 LAYASRKQPQLLILLGPFVDSEHPEIR 315


>dbj|BAK05466.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 625

 Score =  115 bits (288), Expect = 4e-24
 Identities = 60/88 (68%), Positives = 72/88 (81%)
 Frame = +2

Query: 5   DSFPISVSPDVEFPPAKKQAMDHEFQPNSPSSTPKKLSLVIAAGPFTTTDNLLFEPLVEL 184
           DS P+SV  D + P AKKQA+DHE   NS ++  + LS VIAAGPFTTTDNLLFEPL EL
Sbjct: 328 DSIPVSV--DDQLPCAKKQAVDHEGHQNS-NTLSRVLSSVIAAGPFTTTDNLLFEPLQEL 384

Query: 185 LAYATRKQPQLLMLLGPFVDSEHPEIRK 268
           L+YA RKQPQLL+L+GPF+DS+HPEI+K
Sbjct: 385 LSYACRKQPQLLILMGPFIDSDHPEIKK 412