BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029296
         (302 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_178260.1| pentatricopeptide repeat-containing protein [Ar...   146   2e-33
ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002876755.1| pentatricopeptide repeat-containing protein ...   141   5e-32
ref|NP_198857.2| pentatricopeptide repeat-containing protein [Ar...   119   2e-25
ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arab...   119   3e-25

>ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
           gi|3785980|gb|AAC67327.1| hypothetical protein
           [Arabidopsis thaliana] gi|330250369|gb|AEC05463.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 584

 Score =  146 bits (368), Expect = 2e-33
 Identities = 68/100 (68%), Positives = 80/100 (80%)
 Frame = -1

Query: 302 GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
           GLVNEG+ YF  MV + + N++PR EHYACMVDLLGR GLLEEAY FIK MP+EPD+G+W
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIW 384

Query: 122 GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
           GALLGAC  H++  LGQ VAD+L   AP+ GSY VLLSNI
Sbjct: 385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNI 424


>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  145 bits (367), Expect = 3e-33
 Identities = 70/100 (70%), Positives = 78/100 (78%)
 Frame = -1

Query: 302 GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
           G VNEG  YF +M  + + NIQPR EHYACMVDLLGR G LEEAYNFIK MP+E D G+W
Sbjct: 351 GRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIW 410

Query: 122 GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
           GALLGAC  HQN +LGQHVAD+L  LAPE  SY VLLSN+
Sbjct: 411 GALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNM 450


>ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297322593|gb|EFH53014.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 597

 Score =  141 bits (356), Expect = 5e-32
 Identities = 67/100 (67%), Positives = 78/100 (78%)
 Frame = -1

Query: 302 GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
           GLVNEG+ YF  MV   + N++PR EHYACMVDLLGR GLLEEAY FIK M +EPD+G+W
Sbjct: 325 GLVNEGKRYFSLMVRLNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIW 384

Query: 122 GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
           GALLGAC  H++  LGQ VAD+L   AP+ GSY VLLSNI
Sbjct: 385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNI 424


>ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
           gi|10178153|dbj|BAB11598.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|17065126|gb|AAL32717.1| selenium-binding protein-like
           [Arabidopsis thaliana] gi|30725418|gb|AAP37731.1|
           At5g40410 [Arabidopsis thaliana]
           gi|332007162|gb|AED94545.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  119 bits (299), Expect = 2e-25
 Identities = 59/100 (59%), Positives = 72/100 (72%)
 Frame = -1

Query: 302 GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
           GLV EG+ YFE M  +K   I PR++HY+CMVDLLGR GLL++AY  IK MPMEP SGVW
Sbjct: 350 GLVEEGKHYFETM--SKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPSSGVW 407

Query: 122 GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
           GALLGAC  +++T+LG   A+ L  L P  G   V+LSNI
Sbjct: 408 GALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNI 447


>ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
            lyrata] gi|297316544|gb|EFH46967.1| hypothetical protein
            ARALYDRAFT_493946 [Arabidopsis lyrata subsp. lyrata]
          Length = 1111

 Score =  119 bits (297), Expect = 3e-25
 Identities = 58/100 (58%), Positives = 72/100 (72%)
 Frame = -1

Query: 302  GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
            GLV EGR YFE M  +K   I+PR++HY+CMVDL+GR GLL++AY  IK MPMEP SGVW
Sbjct: 853  GLVEEGRYYFETM--SKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVW 910

Query: 122  GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
            GALLGAC  +++T+LG   A  L  L P  G   ++LSNI
Sbjct: 911  GALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNI 950



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/100 (39%), Positives = 58/100 (58%)
 Frame = -1

Query: 302 GLVNEGRGYFEYMVSAKNGNIQPRIEHYACMVDLLGRYGLLEEAYNFIKSMPMEPDSGVW 123
           G V+EG+ +F+ M       I+P+++HY C+VDL  R G LE+A + I+ MPM+  + VW
Sbjct: 363 GFVDEGQKHFDSM--RNEFGIEPQLDHYGCLVDLYARAGRLEDAVSIIQQMPMKAHAAVW 420

Query: 122 GALLGACTTHQNTELGQHVADILSNLAPETGSYRVLLSNI 3
            +LL A   ++N ELG   +  +  L        VLLSNI
Sbjct: 421 SSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLLSNI 460