BLASTX nr result
ID: Coptis24_contig00029283
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00029283
(725 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi... 313 2e-83
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] 311 9e-83
ref|XP_002521565.1| pentatricopeptide repeat-containing protein,... 289 5e-76
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ... 288 8e-76
ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containi... 286 4e-75
>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 313 bits (803), Expect = 2e-83
Identities = 143/240 (59%), Positives = 185/240 (77%)
Frame = +3
Query: 6 CALSTSGDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEY 185
CA SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H Y
Sbjct: 60 CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAY 119
Query: 186 TFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRI 365
TFPFLLKAC+ ++ LEET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD++
Sbjct: 120 TFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179
Query: 366 AEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQ 545
+ D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 546 KMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAKCG 725
+MQ AG+ DN + S L ACA+LG LDQGKWIHAYI K++++ID +LGC L+DMYAKCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299
Score = 95.5 bits (236), Expect = 1e-17
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 6/243 (2%)
Frame = +3
Query: 15 STSGDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 194
S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219
Query: 195 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 374
++ C + +E + + G D + S L A A G L + + I +
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279
Query: 375 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 542
+I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339
Query: 543 QKMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDK--NQMQIDEVLGCNLVDMYA 716
KMQ AGV P+ IL+AC++ G + + K + +++ E GC +VD+
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGC-MVDLLG 398
Query: 717 KCG 725
+ G
Sbjct: 399 RAG 401
Score = 66.6 bits (161), Expect = 5e-09
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Frame = +3
Query: 198 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 371
LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI
Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 372 GDIVSWNSMVDAYVKNKDIEAACRLFNQM----PVKNVISWTSVIAGCVTSGSFKDAIHL 539
+ WN+M+ Y +K+ E A L++ M N ++ ++ C + + ++ +
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140
Query: 540 FQKMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAK 719
+ G + S+L+ + G + + + +D Q D V +++D Y K
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD----QRDTVSWNSMIDGYTK 196
Query: 720 CG 725
CG
Sbjct: 197 CG 198
>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 311 bits (797), Expect = 9e-83
Identities = 142/240 (59%), Positives = 184/240 (76%)
Frame = +3
Query: 6 CALSTSGDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEY 185
CA SG L YAR VF I PNTFMWN MI+GYSN K PE A+LLY+ ML++S+ H Y
Sbjct: 60 CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAY 119
Query: 186 TFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRI 365
TFPFLLKAC+ ++ EET+QIH+HI+K GF S++Y+ NSLL+ Y+KSG + SAR LFD++
Sbjct: 120 TFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQV 179
Query: 366 AEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQ 545
+ D VSWNSM+D Y K +IE A +FN MP +N+ISWTS+I+GCV +G K+A++LF
Sbjct: 180 DQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239
Query: 546 KMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAKCG 725
+MQ AG+ DN + S L ACA+LG LDQGKWIHAYI K++++ID +LGC L+DMYAKCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299
Score = 95.5 bits (236), Expect = 1e-17
Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 6/243 (2%)
Frame = +3
Query: 15 STSGDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFP 194
S SGD+ AR +F + +T WN MI GY+ E A ++N M +I ++
Sbjct: 164 SKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNI----ISWT 219
Query: 195 FLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEG 374
++ C + +E + + G D + S L A A G L + + I +
Sbjct: 220 SMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKH 279
Query: 375 DI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLF 542
+I + ++D Y K D+E A +F +M K V WT++I+G G ++A+ F
Sbjct: 280 EIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWF 339
Query: 543 QKMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDK--NQMQIDEVLGCNLVDMYA 716
KMQ AGV P+ IL+AC++ G + + K + +++ E GC +VD+
Sbjct: 340 MKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGC-MVDLLG 398
Query: 717 KCG 725
+ G
Sbjct: 399 RAG 401
Score = 65.9 bits (159), Expect = 8e-09
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Frame = +3
Query: 198 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLH--AYAKSGKLVSARCLFDRIAE 371
LL+ C+ + EE QIH ++KTG D A+ LL A SG L AR +FDRI
Sbjct: 24 LLQRCSNM---EELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80
Query: 372 GDIVSWNSMVDAYVKNKDIEAACRLFNQM----PVKNVISWTSVIAGCVTSGSFKDAIHL 539
+ WN+M+ Y +K+ E A L++ M N ++ ++ C + + ++ +
Sbjct: 81 PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140
Query: 540 FQKMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAK 719
+ G + S+L+ + G + + + +D Q D V +++D Y K
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVD----QRDTVSWNSMIDGYTK 196
Query: 720 CG 725
CG
Sbjct: 197 CG 198
>ref|XP_002521565.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539243|gb|EEF40836.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 338
Score = 289 bits (739), Expect = 5e-76
Identities = 137/240 (57%), Positives = 181/240 (75%), Gaps = 1/240 (0%)
Frame = +3
Query: 9 ALSTSGDLLYARHVFQTIQS-PNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEY 185
A SG+L YA+ VF ++ S PNT++WN M++GY++ PE A++LY+QML +S+ H Y
Sbjct: 53 ASPNSGNLTYAKIVFDSLSSRPNTYIWNAMLRGYADSNKPEEALILYHQMLCHSVPHNGY 112
Query: 186 TFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRI 365
TFPFLLKAC+ L+ +E+ +Q+H+ I+K GF SDVY+ NSLLHAYA SG + SAR +FDRI
Sbjct: 113 TFPFLLKACSSLSAIEKAQQVHAQIIKLGFGSDVYTTNSLLHAYAASGFIESARIIFDRI 172
Query: 366 AEGDIVSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQ 545
D VSWNS++D YVK + E A LF MP KN IS+T +I+G V +G K+A+ LFQ
Sbjct: 173 PHPDTVSWNSIIDGYVKCGETETAYELFKDMPEKNAISFTVMISGHVQAGLDKEALDLFQ 232
Query: 546 KMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAKCG 725
+MQIAG+ PD V+ ++LSACA+LGALDQG+WIH YI KN +QID +LGC L DMYAKCG
Sbjct: 233 EMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTYIKKNDVQIDPMLGCALTDMYAKCG 292
Score = 57.0 bits (136), Expect = 4e-06
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Frame = +3
Query: 3 LCALSTSGDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTE 182
L A + SG + AR +F I P+T WN +I GY E A L+ M +
Sbjct: 153 LHAYAASGFIESARIIFDRIPHPDTVSWNSIIDGYVKCGETETAYELFKDM----PEKNA 208
Query: 183 YTFPFLLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDR 362
+F ++ + +E + + G D ++L A A G L R +
Sbjct: 209 ISFTVMISGHVQAGLDKEALDLFQEMQIAGIKPDKIVLTNVLSACAHLGALDQGRWIHTY 268
Query: 363 IAEGDI----VSWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDA 530
I + D+ + ++ D Y K ++ A +F + K+V WT++I G G ++A
Sbjct: 269 IKKNDVQIDPMLGCALTDMYAKCGSMQDALEVFKKTRKKSVSLWTALIHGFAIHGRGREA 328
Query: 531 IHLFQ 545
++ Q
Sbjct: 329 LYCLQ 333
>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 518
Score = 288 bits (737), Expect = 8e-76
Identities = 137/233 (58%), Positives = 171/233 (73%)
Frame = +3
Query: 27 DLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 206
+L YAR VF I SPNT MWN MI+ YSN +PE A+LLY+QMLH+SI H YTFPFLLK
Sbjct: 60 NLTYARMVFDRISSPNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLK 119
Query: 207 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 386
AC+ L+ L ET QIH I+K GF S+VY+ NSLL YA SG + SA LFD + DIVS
Sbjct: 120 ACSALSALAETHQIHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVS 179
Query: 387 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 566
WN+M+D Y+K ++E A ++F MP KNVISWTS+I G V +G K+A+ L Q+M +AG+
Sbjct: 180 WNTMIDGYIKCGNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGI 239
Query: 567 IPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAKCG 725
PD ++ LSACA LGAL+QGKWIH YI KN+++ID VLGC L+DMY KCG
Sbjct: 240 KPDKITLSCSLSACAGLGALEQGKWIHTYIGKNKIKIDPVLGCALIDMYVKCG 292
Score = 89.7 bits (221), Expect = 5e-16
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 2/236 (0%)
Frame = +3
Query: 24 GDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 203
G++ A +FQ + N W MI G+ + A+ L QML I+ + T L
Sbjct: 191 GNVEMAYKIFQAMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSL 250
Query: 204 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 383
ACA L LE+ + IH++I K D V
Sbjct: 251 SACAGLGALEQGKWIHTYIGKNKIKIDP-------------------------------V 279
Query: 384 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 563
+++D YVK +++ A +F+++ K V +WT++I G G +A+ F +MQ AG
Sbjct: 280 LGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHGKGSEALDWFTQMQKAG 339
Query: 564 VIPDNTVMASILSACANLGALDQGKWIHAYIDK--NQMQIDEVLGCNLVDMYAKCG 725
+ P + ++L+AC++ G +++GK + + N + E GC +VD+ + G
Sbjct: 340 IKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHYGC-MVDLLGRAG 394
Score = 57.8 bits (138), Expect = 2e-06
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 6/182 (3%)
Frame = +3
Query: 198 LLKACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKS--GKLVSARCLFDRIAE 371
LL+ C+ + L+ QIH ++K G + + LL YA L AR +FDRI+
Sbjct: 17 LLERCSNIGELK---QIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISS 73
Query: 372 GDIVSWNSMVDAYVKNKDIEAACRLFNQM----PVKNVISWTSVIAGCVTSGSFKDAIHL 539
+ V WN+M+ AY + D E A L++QM N ++ ++ C + + +
Sbjct: 74 PNTVMWNTMIRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQI 133
Query: 540 FQKMQIAGVIPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAK 719
++ G + S+L A G++ K H D + D V ++D Y K
Sbjct: 134 HVQIIKRGFGSEVYATNSLLRVYAISGSI---KSAHVLFDLLPSR-DIVSWNTMIDGYIK 189
Query: 720 CG 725
CG
Sbjct: 190 CG 191
>ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 286 bits (731), Expect = 4e-75
Identities = 131/233 (56%), Positives = 173/233 (74%)
Frame = +3
Query: 27 DLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLLK 206
+L Y R VF +I SPNT +WN M++ YSN +PE A+LLY+QMLHNS+ H YTFPFLLK
Sbjct: 59 NLAYTRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLK 118
Query: 207 ACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIVS 386
AC+ L+ EET+QIH+HI+K GF +VY+ NSLL YA SG + SA LF+++ DIVS
Sbjct: 119 ACSALSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVS 178
Query: 387 WNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAGV 566
WN M+D Y+K +++ A ++F MP KNVISWT++I G V G K+A+ L Q+M +AG+
Sbjct: 179 WNIMIDGYIKFGNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGI 238
Query: 567 IPDNTVMASILSACANLGALDQGKWIHAYIDKNQMQIDEVLGCNLVDMYAKCG 725
PD+ ++ LSACA LGAL+QGKWIH YI+KN+++ID VLGC L DMY KCG
Sbjct: 239 KPDSITLSCSLSACAGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCG 291
Score = 88.2 bits (217), Expect = 2e-15
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 2/236 (0%)
Frame = +3
Query: 24 GDLLYARHVFQTIQSPNTFMWNIMIKGYSNDKNPEGAILLYNQMLHNSIQHTEYTFPFLL 203
G+L A +FQ + N W MI G+ + A+ L QML I+ T L
Sbjct: 190 GNLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSL 249
Query: 204 KACAKLARLEETEQIHSHIVKTGFSSDVYSANSLLHAYAKSGKLVSARCLFDRIAEGDIV 383
ACA L LE+ + IH++I K D C+
Sbjct: 250 SACAGLGALEQGKWIHTYIEKNEIKIDPVLG-----------------CV---------- 282
Query: 384 SWNSMVDAYVKNKDIEAACRLFNQMPVKNVISWTSVIAGCVTSGSFKDAIHLFQKMQIAG 563
+ D YVK ++E A +F+++ K V +WT++I G G ++A+ F +MQ AG
Sbjct: 283 ----LTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIHGKGREALDWFTQMQKAG 338
Query: 564 VIPDNTVMASILSACANLGALDQGKWIHAYIDK--NQMQIDEVLGCNLVDMYAKCG 725
+ P++ +IL+AC++ G ++GK + + N E GC +VD+ + G
Sbjct: 339 INPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHYGC-MVDLMGRAG 393