BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029249
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi...   298   6e-79
gb|AFK47126.1| unknown [Medicago truncatula]                          295   5e-78
ref|XP_003630737.1| Pentatricopeptide repeat-containing protein ...   295   5e-78
ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containi...   277   1e-72
ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containi...   277   1e-72

>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
           [Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
           protein product [Vitis vinifera]
          Length = 479

 Score =  298 bits (763), Expect = 6e-79
 Identities = 136/195 (69%), Positives = 165/195 (84%)
 Frame = +3

Query: 3   RMELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLS 182
           RM+LAY+VF  M E +V +WTS+I+G+AMHG + DALECF CMREAGVRPN+VTF+GVLS
Sbjct: 282 RMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALECFRCMREAGVRPNHVTFIGVLS 341

Query: 183 ACVHGGLVQEGRRYFNMMIVEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           ACVHGG VQEG+ YF+MM   YG++P++ HYG MVDLLGRAGLLEEA+ MVE MPM+ANV
Sbjct: 342 ACVHGGAVQEGKYYFDMMTTAYGLVPRMQHYGCMVDLLGRAGLLEEARKMVERMPMKANV 401

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIM 542
           I+WG LMGACEK+G+V+M EWVA+HL ELEPWNDGV+VVLSN+YA  G+W EVER+R +M
Sbjct: 402 IVWGCLMGACEKYGNVKMGEWVAEHLLELEPWNDGVFVVLSNIYASRGLWREVERVRGVM 461

Query: 543 KGRSVAKTPAYSATT 587
           K R + K PAYS  T
Sbjct: 462 KERKLDKVPAYSLAT 476


>gb|AFK47126.1| unknown [Medicago truncatula]
          Length = 447

 Score =  295 bits (755), Expect = 5e-78
 Identities = 134/195 (68%), Positives = 165/195 (84%)
 Frame = +3

Query: 3   RMELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLS 182
           RM+LAY+VF  M +R+V +WTS+I+G+AMHGH ++AL CFHCMRE+GV+PNYVTF+GVLS
Sbjct: 250 RMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLS 309

Query: 183 ACVHGGLVQEGRRYFNMMIVEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           ACVHGG VQEGR YF+MM   YGI P+L HYG MVDLLGRAGL ++A+ MVE MPM+ N 
Sbjct: 310 ACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNS 369

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIM 542
           ++WG LMGACEKHG+V+MAEWVA++L+ LEPWN+GVYVVLSN+YA  G+W+EVERIR  M
Sbjct: 370 VVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFM 429

Query: 543 KGRSVAKTPAYSATT 587
           K   +AK PAYS TT
Sbjct: 430 KEGRLAKIPAYSITT 444


>ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355524759|gb|AET05213.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 447

 Score =  295 bits (755), Expect = 5e-78
 Identities = 134/195 (68%), Positives = 165/195 (84%)
 Frame = +3

Query: 3   RMELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLS 182
           RM+LAY+VF  M +R+V +WTS+I+G+AMHGH ++AL CFHCMRE+GV+PNYVTF+GVLS
Sbjct: 250 RMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLS 309

Query: 183 ACVHGGLVQEGRRYFNMMIVEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           ACVHGG VQEGR YF+MM   YGI P+L HYG MVDLLGRAGL ++A+ MVE MPM+ N 
Sbjct: 310 ACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNS 369

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIM 542
           ++WG LMGACEKHG+V+MAEWVA++L+ LEPWN+GVYVVLSN+YA  G+W+EVERIR  M
Sbjct: 370 VVWGCLMGACEKHGNVDMAEWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFM 429

Query: 543 KGRSVAKTPAYSATT 587
           K   +AK PAYS TT
Sbjct: 430 KEGRLAKIPAYSITT 444


>ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like
            [Cucumis sativus]
          Length = 614

 Score =  277 bits (709), Expect = 1e-72
 Identities = 129/195 (66%), Positives = 155/195 (79%)
 Frame = +3

Query: 3    RMELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLS 182
            RM+LA KVF  M  R+V +WTSLI+G+AMHG V+ ALE F  MREAGV PN VTFVGVLS
Sbjct: 417  RMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLS 476

Query: 183  ACVHGGLVQEGRRYFNMMIVEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
            ACVHGG++ EG+ YF+MM   YG  P+LPHYG MVDLL +AGLLEEA+ M+E MPM+AN 
Sbjct: 477  ACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANS 536

Query: 363  IIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIM 542
            IIWG L+G CEKHG+VE+ EW  KHL+ELEPWNDGVYVVLSN+YA  GMW+E +++R +M
Sbjct: 537  IIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVM 596

Query: 543  KGRSVAKTPAYSATT 587
            K R +AK P YS  T
Sbjct: 597  KQRQLAKVPGYSLAT 611



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
 Frame = +3

Query: 6   MELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLSA 185
           +E A KVF     R + +W ++I G +  G  ++A+  F  +R++G+ P+  T V V SA
Sbjct: 315 LECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSA 374

Query: 186 CVHGGLVQEGRRYFNMMI-VEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           C   G ++   +    +  V+      +     ++D+ G+ G ++ A  +  NM    NV
Sbjct: 375 CGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMG-HRNV 433

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEEL-EPWNDGVYVVLSNVYAGAGMWEEVERIRMI 539
             W +L+     HG V+ A    + + E   P N   +V + +     GM  E +    +
Sbjct: 434 SSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDM 493

Query: 540 MK 545
           MK
Sbjct: 494 MK 495


>ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g77170-like [Cucumis sativus]
          Length = 609

 Score =  277 bits (709), Expect = 1e-72
 Identities = 129/195 (66%), Positives = 155/195 (79%)
 Frame = +3

Query: 3   RMELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLS 182
           RM+LA KVF  M  R+V +WTSLI+G+AMHG V+ ALE F  MREAGV PN VTFVGVLS
Sbjct: 412 RMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLS 471

Query: 183 ACVHGGLVQEGRRYFNMMIVEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           ACVHGG++ EG+ YF+MM   YG  P+LPHYG MVDLL +AGLLEEA+ M+E MPM+AN 
Sbjct: 472 ACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMKANS 531

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIM 542
           IIWG L+G CEKHG+VE+ EW  KHL+ELEPWNDGVYVVLSN+YA  GMW+E +++R +M
Sbjct: 532 IIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMRDVM 591

Query: 543 KGRSVAKTPAYSATT 587
           K R +AK P YS  T
Sbjct: 592 KQRQLAKVPGYSLAT 606



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
 Frame = +3

Query: 6   MELAYKVFVGMVERSVLTWTSLIMGFAMHGHVRDALECFHCMREAGVRPNYVTFVGVLSA 185
           +E A KVF     R + +W ++I G +  G  ++A+  F  +R++G+ P+  T V V SA
Sbjct: 310 LECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSA 369

Query: 186 CVHGGLVQEGRRYFNMMI-VEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANV 362
           C   G ++   +    +  V+      +     ++D+ G+ G ++ A  +  NM    NV
Sbjct: 370 CGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMG-HRNV 428

Query: 363 IIWGALMGACEKHGSVEMAEWVAKHLEEL-EPWNDGVYVVLSNVYAGAGMWEEVERIRMI 539
             W +L+     HG V+ A    + + E   P N   +V + +     GM  E +    +
Sbjct: 429 SSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINEGKHYFDM 488

Query: 540 MK 545
           MK
Sbjct: 489 MK 490