BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029231
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29
emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]   134   1e-29
ref|XP_003637737.1| Pentatricopeptide repeat-containing protein ...    90   2e-16
ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containi...    89   5e-16
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...    86   4e-15

>ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  134 bits (336), Expect = 1e-29
 Identities = 63/87 (72%), Positives = 74/87 (85%)
 Frame = +2

Query: 2   GVQPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYR 181
           GV+PD+VTWN+IISGY+Q G+FEEAS +F +M  L DFKPNVVSWTALI GSEQNG  + 
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 182 ALQVFSQMIMERVKPNSITIASAVSAC 262
           AL VF +M++E VKPNSITIASAVSAC
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/85 (35%), Positives = 52/85 (61%)
 Frame = +2

Query: 8   QPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYRAL 187
           Q D V+WN++++GY+ +G  EEA     +M+     +P++++W  L+TG  Q G    AL
Sbjct: 426 QTDLVSWNAMLAGYALRGSHEEAIELLSEMK-FQGIEPDIITWNGLVTGFTQYGDGKAAL 484

Query: 188 QVFSQMIMERVKPNSITIASAVSAC 262
           + F +M    + PN+ TI+ A++AC
Sbjct: 485 EFFQRMHSMGMDPNTTTISGALAAC 509


>emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  134 bits (336), Expect = 1e-29
 Identities = 63/87 (72%), Positives = 74/87 (85%)
 Frame = +2

Query: 2   GVQPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYR 181
           GV+PD+VTWN+IISGY+Q G+FEEAS +F +M  L DFKPNVVSWTALI GSEQNG  + 
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 182 ALQVFSQMIMERVKPNSITIASAVSAC 262
           AL VF +M++E VKPNSITIASAVSAC
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/85 (35%), Positives = 52/85 (61%)
 Frame = +2

Query: 8   QPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYRAL 187
           Q D V+WN++++GY+ +G  EEA     +M+     +P++++W  L+TG  Q G    AL
Sbjct: 426 QTDLVSWNAMLAGYALRGSHEEAIELLSEMK-FQGIEPDIITWNGLVTGFTQYGDGKAAL 484

Query: 188 QVFSQMIMERVKPNSITIASAVSAC 262
           + F +M    + PN+ TI+ A++AC
Sbjct: 485 EFFQRMHSMGMDPNTTTISGALAAC 509


>ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503672|gb|AES84875.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 561

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 44/87 (50%), Positives = 59/87 (67%)
 Frame = +2

Query: 2   GVQPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYR 181
           G+ PD VTWN ++SGYS +G+ +EA     ++++ +   PNVVSWTALI+G  QN     
Sbjct: 114 GITPDLVTWNGLVSGYSMQGRIDEALTIINRIKS-SGITPNVVSWTALISGCSQNEKYMD 172

Query: 182 ALQVFSQMIMERVKPNSITIASAVSAC 262
           AL++FSQM  E VKPNS TI S + AC
Sbjct: 173 ALKIFSQMQAENVKPNSTTICSLLCAC 199


>ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 46/87 (52%), Positives = 59/87 (67%)
 Frame = +2

Query: 2   GVQPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYR 181
           G++PD VTWNS++SGYS  G+ EEA     ++++L    PNVVSWTA+I+G  QN     
Sbjct: 464 GIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSL-GLTPNVVSWTAMISGCCQNENYMD 522

Query: 182 ALQVFSQMIMERVKPNSITIASAVSAC 262
           ALQ FSQM  E VKPNS TI + + AC
Sbjct: 523 ALQFFSQMQEENVKPNSTTICTLLRAC 549


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 41/87 (47%), Positives = 61/87 (70%)
 Frame = +2

Query: 2   GVQPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYR 181
           G++P  V+WN +I+GY+Q G F+ A     KM  L    P+VV+WT++I+G  QN  + +
Sbjct: 270 GIEPGLVSWNILIAGYNQLGYFDIAMELMKKMEVLGT-SPDVVTWTSMISGLAQNDKASK 328

Query: 182 ALQVFSQMIMERVKPNSITIASAVSAC 262
           AL +F+ MI+ RV+PN +TI+SAVSAC
Sbjct: 329 ALHLFNDMILARVEPNGVTISSAVSAC 355



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/85 (37%), Positives = 48/85 (56%)
 Frame = +2

Query: 8   QPDRVTWNSIISGYSQKGKFEEASNFFFKMRALTDFKPNVVSWTALITGSEQNGCSYRAL 187
           QP+ +TWN++I GY   G  ++A + F +M      K +  SW +LI+G  Q G   +AL
Sbjct: 443 QPNAITWNNMIWGYIHNGDEDQAMDLFRRMEEDGKIKRDTASWNSLISGYLQIGQKDKAL 502

Query: 188 QVFSQMIMERVKPNSITIASAVSAC 262
            +F QM    +  NS+TI S + AC
Sbjct: 503 SIFRQMQSFSININSVTILSVLPAC 527