BLASTX nr result

ID: Coptis24_contig00029120 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029120
         (398 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17183.3| unnamed protein product [Vitis vinifera]              108   5e-22
ref|XP_002274452.1| PREDICTED: uncharacterized protein LOC100265...   108   6e-22
ref|XP_002313350.1| predicted protein [Populus trichocarpa] gi|2...    96   3e-18
ref|XP_002318884.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
ref|XP_003565040.1| PREDICTED: uncharacterized protein LOC100823...    85   5e-15

>emb|CBI17183.3| unnamed protein product [Vitis vinifera]
          Length = 161

 Score =  108 bits (270), Expect = 5e-22
 Identities = 50/89 (56%), Positives = 62/89 (69%)
 Frame = -2

Query: 388 MLDKSTSTQPTGLKTNVLWGWCFIVFGCMSFLGFIYAAVLSKLLPPSDNPVLSAIQKDRY 209
           +++ S ++Q    K  V WGW F++FG + FLGF+YAAV+SKLLPPS N ++SAIQKDRY
Sbjct: 73  IMNTSITSQFVASKDRVFWGWIFLIFGSIFFLGFLYAAVISKLLPPSGNVIISAIQKDRY 132

Query: 208 YCXXXXXXXXXXXXXVYFHWLSMKLFKHA 122
           YC             VYFHWLSMKLFKHA
Sbjct: 133 YCFLVPLTIPILIVAVYFHWLSMKLFKHA 161


>ref|XP_002274452.1| PREDICTED: uncharacterized protein LOC100265449 [Vitis vinifera]
          Length = 88

 Score =  108 bits (269), Expect = 6e-22
 Identities = 50/88 (56%), Positives = 61/88 (69%)
 Frame = -2

Query: 385 LDKSTSTQPTGLKTNVLWGWCFIVFGCMSFLGFIYAAVLSKLLPPSDNPVLSAIQKDRYY 206
           ++ S ++Q    K  V WGW F++FG + FLGF+YAAV+SKLLPPS N ++SAIQKDRYY
Sbjct: 1   MNTSITSQFVASKDRVFWGWIFLIFGSIFFLGFLYAAVISKLLPPSGNVIISAIQKDRYY 60

Query: 205 CXXXXXXXXXXXXXVYFHWLSMKLFKHA 122
           C             VYFHWLSMKLFKHA
Sbjct: 61  CFLVPLTIPILIVAVYFHWLSMKLFKHA 88


>ref|XP_002313350.1| predicted protein [Populus trichocarpa] gi|222849758|gb|EEE87305.1|
           predicted protein [Populus trichocarpa]
          Length = 85

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 44/76 (57%), Positives = 54/76 (71%)
 Frame = -2

Query: 349 KTNVLWGWCFIVFGCMSFLGFIYAAVLSKLLPPSDNPVLSAIQKDRYYCXXXXXXXXXXX 170
           +T    GW FI+ G +SF+GF++AAV+SKLLP SDNP++SAIQ DRYYC           
Sbjct: 10  ETATFRGWLFILMGSVSFVGFLFAAVISKLLPLSDNPIISAIQNDRYYCFLVPLTLPILV 69

Query: 169 XXVYFHWLSMKLFKHA 122
             VYFHWLSMK+FKHA
Sbjct: 70  SAVYFHWLSMKMFKHA 85


>ref|XP_002318884.1| predicted protein [Populus trichocarpa] gi|222859557|gb|EEE97104.1|
           predicted protein [Populus trichocarpa]
          Length = 80

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 43/76 (56%), Positives = 51/76 (67%)
 Frame = -2

Query: 349 KTNVLWGWCFIVFGCMSFLGFIYAAVLSKLLPPSDNPVLSAIQKDRYYCXXXXXXXXXXX 170
           KT    GW  I+ G +SF+GF+ AAV+SKLLP SD+P++SAIQ DRYYC           
Sbjct: 5   KTATFSGWLLILIGSVSFVGFLSAAVISKLLPLSDSPIISAIQNDRYYCFLVPLTLPILI 64

Query: 169 XXVYFHWLSMKLFKHA 122
             VY HWLSMKLFKHA
Sbjct: 65  IAVYSHWLSMKLFKHA 80


>ref|XP_003565040.1| PREDICTED: uncharacterized protein LOC100823748 [Brachypodium
           distachyon]
          Length = 79

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/72 (56%), Positives = 48/72 (66%)
 Frame = -2

Query: 337 LWGWCFIVFGCMSFLGFIYAAVLSKLLPPSDNPVLSAIQKDRYYCXXXXXXXXXXXXXVY 158
           L G  F+ FG + F+GF YAAV+SKLLPP +N +LSAIQ DRYYC             VY
Sbjct: 8   LVGSAFVAFGILLFVGFFYAAVVSKLLPPYENRLLSAIQNDRYYCLLVPLTLPVIIVAVY 67

Query: 157 FHWLSMKLFKHA 122
            HWLSMK+FKHA
Sbjct: 68  LHWLSMKMFKHA 79


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