BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029033
         (232 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB75484.1| putative protein [Arabidopsis thaliana]                95   7e-18
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    93   2e-17
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    93   2e-17
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    92   3e-17
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    91   8e-17

>emb|CAB75484.1| putative protein [Arabidopsis thaliana]
          Length = 851

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 39/75 (52%), Positives = 54/75 (72%)
 Frame = -2

Query: 225 KAPGPDGFTPLFYQKYWDIISSDLLNTIKSFMNSDHILAELNHTNITLIPKCQRPETLDQ 46
           KAPGPDG T  FY++ WDI+ +D++  +K F  S H+   +NHTNI +IPK Q P+TL  
Sbjct: 65  KAPGPDGLTARFYKQCWDIVGNDVIKEVKLFFESSHMKTSVNHTNICMIPKIQNPQTLSD 124

Query: 45  FRPISLCNVSLRIIS 1
           +RPI+LCNV  ++IS
Sbjct: 125 YRPIALCNVLYKVIS 139


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/77 (53%), Positives = 53/77 (68%)
 Frame = -2

Query: 231 PHKAPGPDGFTPLFYQKYWDIISSDLLNTIKSFMNSDHILAELNHTNITLIPKCQRPETL 52
           P KAPGPDG T  FYQ YWD+   DL+  +++F ++      LN TNI LIPK +RP  +
Sbjct: 23  PDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKM 82

Query: 51  DQFRPISLCNVSLRIIS 1
            +FRPISLCNVS ++IS
Sbjct: 83  AEFRPISLCNVSYKVIS 99


>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 41/77 (53%), Positives = 53/77 (68%)
 Frame = -2

Query: 231 PHKAPGPDGFTPLFYQKYWDIISSDLLNTIKSFMNSDHILAELNHTNITLIPKCQRPETL 52
           P KAPGPDG T  FYQ YWD+   DL+  +++F ++      LN TNI LIPK +RP  +
Sbjct: 389 PDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKM 448

Query: 51  DQFRPISLCNVSLRIIS 1
            +FRPISLCNVS ++IS
Sbjct: 449 AEFRPISLCNVSYKVIS 465


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 42/75 (56%), Positives = 51/75 (68%)
 Frame = -2

Query: 225 KAPGPDGFTPLFYQKYWDIISSDLLNTIKSFMNSDHILAELNHTNITLIPKCQRPETLDQ 46
           KAPGPDG   +FYQK+W I+  D+   +  F  + +IL E N TNI LIPK +RPE   Q
Sbjct: 457 KAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKVERPEQACQ 516

Query: 45  FRPISLCNVSLRIIS 1
           FRPISLCNV  +IIS
Sbjct: 517 FRPISLCNVIYKIIS 531


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 43/77 (55%), Positives = 52/77 (67%)
 Frame = -2

Query: 231 PHKAPGPDGFTPLFYQKYWDIISSDLLNTIKSFMNSDHILAELNHTNITLIPKCQRPETL 52
           P KAPGPDG T LF+QK W II SDLL+ + SF+        LN TNI LIPK +RP  +
Sbjct: 226 PEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRM 285

Query: 51  DQFRPISLCNVSLRIIS 1
            + RPISLCNV  ++IS
Sbjct: 286 TELRPISLCNVGYKVIS 302