BLASTX nr result
ID: Coptis24_contig00029025
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00029025
(894 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containi... 315 7e-84
emb|CBI25349.3| unnamed protein product [Vitis vinifera] 315 7e-84
ref|XP_002520874.1| pentatricopeptide repeat-containing protein,... 291 1e-76
ref|XP_002319343.1| predicted protein [Populus trichocarpa] gi|2... 285 1e-74
ref|NP_181604.1| pentatricopeptide repeat-containing protein [Ar... 269 7e-70
>ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
[Vitis vinifera]
Length = 836
Score = 315 bits (808), Expect = 7e-84
Identities = 161/293 (54%), Positives = 206/293 (70%)
Frame = +3
Query: 15 IGDAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSA 194
+ DAK VFD VLDKE+ L NAMIS I + + AL Y +M+ FTI+++LS
Sbjct: 295 VEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSG 354
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
C + SYDFGR VH E+IKR + S+ +QSALLTMY KCG EDA VF T+KERD
Sbjct: 355 CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV--- 411
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGF 554
AWGSM++GFC N +++ L+LF+AM+ +GV+ DS ++TS+++A LE+ ELG LIHGF
Sbjct: 412 VAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGF 471
Query: 555 AMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELS 734
A+K G+ D FV C+L+DMY+K + AE VFS MP KNLVAWNS+ CY+ N LPE+S
Sbjct: 472 AIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMS 531
Query: 735 ISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
I+ LPQI+ HG DSVSIT LVA+SS+ LLKGK +H Y IRL I SDLQV
Sbjct: 532 INLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQV 584
Score = 128 bits (322), Expect = 2e-27
Identities = 82/278 (29%), Positives = 140/278 (50%)
Frame = +3
Query: 60 IVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINSYDFGRRVHG 239
IV WN MI + + ++LE Y + + + T +AC DFGR+VH
Sbjct: 209 IVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHC 268
Query: 240 EMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFAWGSMVSGFCHNMK 419
++IK V ++LLTMYAK G EDAK VF + +++ +M+S F N +
Sbjct: 269 DVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE---LRNAMISAFIGNGR 325
Query: 420 YEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGCA 599
L L+ M+A +DS ++S+L+ + + + GR +H +K M + + A
Sbjct: 326 AYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSA 385
Query: 600 LIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSISFLPQIIHHGLTPD 779
L+ MY KC + A+SVF M E+++VAW S+ + +N + ++ + G+ D
Sbjct: 386 LLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKAD 445
Query: 780 SVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
S +T+ + A L + G +HG+ I+ ++SD+ V
Sbjct: 446 SDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFV 483
Score = 127 bits (319), Expect = 3e-27
Identities = 77/265 (29%), Positives = 137/265 (51%)
Frame = +3
Query: 21 DAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACG 200
DA VF + ++++V W +MI+ + AL+ + M G+++ +T+++SA
Sbjct: 398 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 457
Query: 201 TINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFA 380
+ + + G +HG IKR + S V +L+ MY+K G+ E A++VFS++ ++ A
Sbjct: 458 GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNL---VA 514
Query: 381 WGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAM 560
W SM+S + N E +NL + G LDS +T++L A +++ G+ +H + +
Sbjct: 515 WNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQI 574
Query: 561 KNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSIS 740
+ + D V ALIDMY KC A+ +F MP +NLV WNS+ Y + E ++
Sbjct: 575 RLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVR 634
Query: 741 FLPQIIHHGLTPDSVSITNSLVAIS 815
++ PD V+ + + S
Sbjct: 635 LFKEMKRSETAPDEVTFLALITSCS 659
Score = 100 bits (249), Expect = 5e-19
Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 3/274 (1%)
Frame = +3
Query: 72 NAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINSYDFGRRVHGEMIK 251
N+ I + QALE + + S L + FT ++L C ++++ GR +H ++
Sbjct: 24 NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83
Query: 252 RPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKE-RDTGHTF-AWGSMVSGFCHNMKYE 425
+ S + ++L+ MY KCG A VF + E RD+ W ++ G+ +E
Sbjct: 84 MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143
Query: 426 KGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGCALI 605
+GL F MQ L GR IHG+ ++N D ++ ALI
Sbjct: 144 EGLAQFCRMQ-------------------ELSWYMAGRQIHGYIIRNMFEGDPYLETALI 184
Query: 606 DMYAKCVLPDGAESVFSKMPEK-NLVAWNSITCCYNRNALPELSISFLPQIIHHGLTPDS 782
MY+ C P A S+F K+ + N+VAWN + + N + E S+ + S
Sbjct: 185 GMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVS 244
Query: 783 VSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSD 884
S T + A S L G+ VH I++ Q D
Sbjct: 245 ASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 278
Score = 89.0 bits (219), Expect = 1e-15
Identities = 75/301 (24%), Positives = 137/301 (45%), Gaps = 8/301 (2%)
Frame = +3
Query: 15 IGDAK*VFDGVLDK-----EIVLWNAMISECIFSNYGH--QALENYIEMRFSGLQSGHFT 173
+G A VFD + + +I +WN +I + YGH + L + M+
Sbjct: 106 LGSALQVFDKMSESRDSAPDITVWNPVIDG--YFKYGHFEEGLAQFCRMQ---------- 153
Query: 174 ITNILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIK 353
++ Y GR++HG +I+ +++AL+ MY+ C +A +F ++
Sbjct: 154 ---------ELSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLE 204
Query: 354 ERDTGHTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAEL 533
R + AW M+ GF N +EK L L+ + + +L S T A + E +
Sbjct: 205 NRS--NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDF 262
Query: 534 GRLIHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNR 713
GR +H +K D +V +L+ MYAK + A+ VF ++ +K + N++ +
Sbjct: 263 GRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIG 322
Query: 714 NALPELSISFLPQIIHHGLTP-DSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQ 890
N ++ L + G TP DS +I++ L S + + G+ VH I+ +QS++
Sbjct: 323 NGRAYDALG-LYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 381
Query: 891 V 893
+
Sbjct: 382 I 382
>emb|CBI25349.3| unnamed protein product [Vitis vinifera]
Length = 1241
Score = 315 bits (808), Expect = 7e-84
Identities = 161/293 (54%), Positives = 206/293 (70%)
Frame = +3
Query: 15 IGDAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSA 194
+ DAK VFD VLDKE+ L NAMIS I + + AL Y +M+ FTI+++LS
Sbjct: 700 VEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSG 759
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
C + SYDFGR VH E+IKR + S+ +QSALLTMY KCG EDA VF T+KERD
Sbjct: 760 CSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDV--- 816
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGF 554
AWGSM++GFC N +++ L+LF+AM+ +GV+ DS ++TS+++A LE+ ELG LIHGF
Sbjct: 817 VAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGF 876
Query: 555 AMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELS 734
A+K G+ D FV C+L+DMY+K + AE VFS MP KNLVAWNS+ CY+ N LPE+S
Sbjct: 877 AIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMS 936
Query: 735 ISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
I+ LPQI+ HG DSVSIT LVA+SS+ LLKGK +H Y IRL I SDLQV
Sbjct: 937 INLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQV 989
Score = 128 bits (322), Expect = 2e-27
Identities = 82/278 (29%), Positives = 140/278 (50%)
Frame = +3
Query: 60 IVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINSYDFGRRVHG 239
IV WN MI + + ++LE Y + + + T +AC DFGR+VH
Sbjct: 614 IVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHC 673
Query: 240 EMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFAWGSMVSGFCHNMK 419
++IK V ++LLTMYAK G EDAK VF + +++ +M+S F N +
Sbjct: 674 DVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVE---LRNAMISAFIGNGR 730
Query: 420 YEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGCA 599
L L+ M+A +DS ++S+L+ + + + GR +H +K M + + A
Sbjct: 731 AYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSA 790
Query: 600 LIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSISFLPQIIHHGLTPD 779
L+ MY KC + A+SVF M E+++VAW S+ + +N + ++ + G+ D
Sbjct: 791 LLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKAD 850
Query: 780 SVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
S +T+ + A L + G +HG+ I+ ++SD+ V
Sbjct: 851 SDVMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFV 888
Score = 127 bits (319), Expect = 3e-27
Identities = 77/265 (29%), Positives = 137/265 (51%)
Frame = +3
Query: 21 DAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACG 200
DA VF + ++++V W +MI+ + AL+ + M G+++ +T+++SA
Sbjct: 803 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 862
Query: 201 TINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFA 380
+ + + G +HG IKR + S V +L+ MY+K G+ E A++VFS++ ++ A
Sbjct: 863 GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNL---VA 919
Query: 381 WGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAM 560
W SM+S + N E +NL + G LDS +T++L A +++ G+ +H + +
Sbjct: 920 WNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQI 979
Query: 561 KNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSIS 740
+ + D V ALIDMY KC A+ +F MP +NLV WNS+ Y + E ++
Sbjct: 980 RLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVR 1039
Query: 741 FLPQIIHHGLTPDSVSITNSLVAIS 815
++ PD V+ + + S
Sbjct: 1040 LFKEMKRSETAPDEVTFLALITSCS 1064
Score = 115 bits (288), Expect = 1e-23
Identities = 77/260 (29%), Positives = 124/260 (47%), Gaps = 3/260 (1%)
Frame = +3
Query: 114 QALENYIEMRFSGLQSGHFTITNILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALL 293
QALE + + S L + FT ++L C ++++ GR +H ++ + S + ++L+
Sbjct: 424 QALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLI 483
Query: 294 TMYAKCGYNEDAKLVFSTIKE-RDTGHTFA-WGSMVSGFCHNMKYEKGLNLFKAMQADGV 467
MY KCG A VF + E RD+ W ++ G+ +E+GL F MQ G+
Sbjct: 484 NMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGI 543
Query: 468 RLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAES 647
R D ++ +L L GR IHG+ ++N D ++ ALI MY+ C P A S
Sbjct: 544 RPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWS 603
Query: 648 VFSKMPEK-NLVAWNSITCCYNRNALPELSISFLPQIIHHGLTPDSVSITNSLVAISSLT 824
+F K+ + N+VAWN + + N + E S+ + S S T + A S
Sbjct: 604 LFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGE 663
Query: 825 TLLKGKAVHGYYIRLYIQSD 884
L G+ VH I++ Q D
Sbjct: 664 VLDFGRQVHCDVIKMNFQDD 683
Score = 107 bits (268), Expect = 3e-21
Identities = 78/301 (25%), Positives = 147/301 (48%), Gaps = 8/301 (2%)
Frame = +3
Query: 15 IGDAK*VFDGVLDK-----EIVLWNAMISECIFSNYGH--QALENYIEMRFSGLQSGHFT 173
+G A VFD + + +I +WN +I + YGH + L + M+ G++ ++
Sbjct: 492 LGSALQVFDKMSESRDSAPDITVWNPVIDG--YFKYGHFEEGLAQFCRMQELGIRPDGYS 549
Query: 174 ITNILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIK 353
++ +L C ++ Y GR++HG +I+ +++AL+ MY+ C +A +F ++
Sbjct: 550 LSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLE 609
Query: 354 ERDTGHTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAEL 533
R + AW M+ GF N +EK L L+ + + +L S T A + E +
Sbjct: 610 NRS--NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDF 667
Query: 534 GRLIHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNR 713
GR +H +K D +V +L+ MYAK + A+ VF ++ +K + N++ +
Sbjct: 668 GRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIG 727
Query: 714 NALPELSISFLPQIIHHGLTP-DSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQ 890
N ++ L + G TP DS +I++ L S + + G+ VH I+ +QS++
Sbjct: 728 NGRAYDALG-LYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVA 786
Query: 891 V 893
+
Sbjct: 787 I 787
Score = 69.3 bits (168), Expect = 1e-09
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 5/161 (3%)
Frame = +3
Query: 417 KYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGC 596
KY + L L + S+L A+L + GR IH + G+ D ++
Sbjct: 421 KYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIAT 480
Query: 597 ALIDMYAKCVLPDGAESVFSKMPEK-----NLVAWNSITCCYNRNALPELSISFLPQIIH 761
+LI+MY KC L A VF KM E ++ WN + Y + E ++ ++
Sbjct: 481 SLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE 540
Query: 762 HGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSD 884
G+ PD S++ L + L+ + G+ +HGY IR + D
Sbjct: 541 LGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGD 581
>ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540005|gb|EEF41583.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 833
Score = 291 bits (745), Expect = 1e-76
Identities = 150/293 (51%), Positives = 202/293 (68%)
Frame = +3
Query: 15 IGDAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSA 194
I A+ VF+ V DKEI LWNA+IS + + Y + AL Y +M+ + S FTI N+L++
Sbjct: 292 IESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTS 351
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
YD GR +H E++KRP+ SS +QSALLTMY+K G + A +FST+KERD
Sbjct: 352 SSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDV--- 408
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGF 554
AWGS++SGFC N KY++ L+ F+AM+AD V+ DS I+ SI++A LE +LG IHGF
Sbjct: 409 VAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGF 468
Query: 555 AMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELS 734
+K+G+ D FV +L+DMY+K P+ A ++FS MP KNLVAWNSI CY RN LP+LS
Sbjct: 469 VIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLS 528
Query: 735 ISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
I+ Q++ + L PDSVS T+ L AISS+ LLKGK+VHGY +RL+I DLQV
Sbjct: 529 INLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQV 581
Score = 128 bits (322), Expect = 2e-27
Identities = 80/269 (29%), Positives = 140/269 (52%), Gaps = 3/269 (1%)
Frame = +3
Query: 6 FMQIGD---AK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTI 176
+ + GD A +F + ++++V W ++IS + +AL+ + M ++ +
Sbjct: 387 YSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIM 446
Query: 177 TNILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKE 356
+I+SAC + D G +HG +IK + V S+LL MY+K G+ E A +FS +
Sbjct: 447 ASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPL 506
Query: 357 RDTGHTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELG 536
++ AW S++S +C N + +NLF + + + DS TS+L A +++ G
Sbjct: 507 KNL---VAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKG 563
Query: 537 RLIHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRN 716
+ +HG+ ++ + FD V LIDMY KC L A+ +F ++ EKNLVAWNS+ Y +
Sbjct: 564 KSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNLVAWNSMIGGYGSH 623
Query: 717 ALPELSISFLPQIIHHGLTPDSVSITNSL 803
+I ++ G+ PD V+ + L
Sbjct: 624 GECSKAIELFDEMRSSGIKPDDVTFLSLL 652
Score = 112 bits (281), Expect = 9e-23
Identities = 76/296 (25%), Positives = 139/296 (46%), Gaps = 5/296 (1%)
Frame = +3
Query: 21 DAK*VFD-----GVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNI 185
DA VFD GV ++ +WN++I + Y RF L+ G +
Sbjct: 106 DAVKVFDQLPKSGVSVDDVTIWNSII-------------DGYF--RFGQLEEGMVQFGRM 150
Query: 186 LSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDT 365
S+ Y G+++H +++ + +++AL+ Y KCG +A+ +F +K+R
Sbjct: 151 QSS-----GYKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRS- 204
Query: 366 GHTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLI 545
+ AW M+ GF N +E L + + + V++ S+ T L+A E G+ +
Sbjct: 205 -NIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFVSFGKQV 263
Query: 546 HGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALP 725
H A+K G D +V +L+ MY KC + + AE VF+++P+K + WN++ Y N
Sbjct: 264 HCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYA 323
Query: 726 ELSISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
++ Q+ + DS +I N L + S G+ +H ++ +QS + +
Sbjct: 324 YDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITI 379
Score = 100 bits (249), Expect = 5e-19
Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 3/276 (1%)
Frame = +3
Query: 66 LWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINSYDFGRRVHGEM 245
L N+ I + +AL+ Y + S + + FT ++L AC ++++ +G+ +H +
Sbjct: 23 LLNSEIKSLVQQRQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSI 79
Query: 246 IKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKER--DTGHTFAWGSMVSGFCHNMK 419
I + S + S+L+ +Y KCG DA VF + + W S++ G+ +
Sbjct: 80 ITTGLHSDQYITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQ 139
Query: 420 YEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMSFDAFVGCA 599
E+G+ F MQ+ G + G+ IH + ++N ++FD F+ A
Sbjct: 140 LEEGMVQFGRMQSSGYK--------------------EGKQIHSYIVRNMLNFDPFLETA 179
Query: 600 LIDMYAKCVLPDGAESVFSKMPEK-NLVAWNSITCCYNRNALPELSISFLPQIIHHGLTP 776
LID Y KC P A +F K+ ++ N+VAWN + + N L E S+ + +
Sbjct: 180 LIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKV 239
Query: 777 DSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSD 884
S S T +L A + GK VH I++ + D
Sbjct: 240 VSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDD 275
Score = 79.7 bits (195), Expect = 8e-13
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 2/225 (0%)
Frame = +3
Query: 33 VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINS 212
+F + K +V WN++IS +N ++ + ++ + L + T++L+A ++ +
Sbjct: 500 IFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAA 559
Query: 213 YDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFAWGSM 392
G+ VHG +++ + V++ L+ MY KCG + A+ +F I E++ AW SM
Sbjct: 560 LLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQHIFERISEKNL---VAWNSM 616
Query: 393 VSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELG-RLIHGFAMKNG 569
+ G+ + + K + LF M++ G++ D S+L++ E G L MK G
Sbjct: 617 IGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFG 676
Query: 570 MSFDAFVGCALIDMYAKCVLPDGAESVFSKMP-EKNLVAWNSITC 701
+ ++D+Y + A S MP E + W S+ C
Sbjct: 677 IEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSLLC 721
>ref|XP_002319343.1| predicted protein [Populus trichocarpa] gi|222857719|gb|EEE95266.1|
predicted protein [Populus trichocarpa]
Length = 848
Score = 285 bits (728), Expect = 1e-74
Identities = 146/293 (49%), Positives = 197/293 (67%)
Frame = +3
Query: 15 IGDAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSA 194
+ DA+ VFD V K+ LWNAMIS + + + L+ Y +M+ + T TN+LS+
Sbjct: 307 VEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSS 366
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
C + SYDFGR +H E++KRP+ S+ +QSALLTMY+KCG ++DA +F+TIK RD
Sbjct: 367 CCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDV--- 423
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGF 554
AWGSM+SGFC N KY + L + +M G + DS I+ S+++A L++ LG IHG
Sbjct: 424 VAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCTIHGL 483
Query: 555 AMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELS 734
A+K+G+ D FV +L+DMY+K P + +VFS MP KNLVAWNSI CY RN LP+LS
Sbjct: 484 AIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLS 543
Query: 735 ISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDLQV 893
IS Q+ +GL PDSVSIT+ LV++SS+ L KGKAVHGY IR I SDLQ+
Sbjct: 544 ISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLIRQRIPSDLQL 596
Score = 115 bits (289), Expect = 1e-23
Identities = 74/295 (25%), Positives = 141/295 (47%), Gaps = 5/295 (1%)
Frame = +3
Query: 18 GDAK*VFDGVLDKEI-----VLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITN 182
G+A VFD + + E+ WN++++ + + + + M+ G++ +++
Sbjct: 102 GNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCI 161
Query: 183 ILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERD 362
+L A + +++HG +++ ++S L+ MY CG DA +F ++ D
Sbjct: 162 LLGASD--GHLGYAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELE--D 217
Query: 363 TGHTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRL 542
G+ AW M+ GF N +E L ++ + + V+L S TS L+A E G
Sbjct: 218 KGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQ 277
Query: 543 IHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNAL 722
+H +K G D +V +L+ MY+KC L + AE+VF ++ K WN++ Y N
Sbjct: 278 VHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGR 337
Query: 723 PELSISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSDL 887
+ Q+ + PDS++ TN L + + + G+ +H ++ IQS++
Sbjct: 338 SYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNV 392
Score = 115 bits (289), Expect = 1e-23
Identities = 71/263 (26%), Positives = 133/263 (50%)
Frame = +3
Query: 21 DAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACG 200
DA +F+ + +++V W +MIS + +ALE Y M G + + +++SAC
Sbjct: 410 DANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACT 469
Query: 201 TINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFA 380
+ + + G +HG IK + V S+L+ MY+K + + + VFS + ++ A
Sbjct: 470 GLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNL---VA 526
Query: 381 WGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAM 560
W S++S +C N + ++LF M G+ DS +TS+L + +++ G+ +HG+ +
Sbjct: 527 WNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAVHGYLI 586
Query: 561 KNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSIS 740
+ + D + ALIDMY KC A+ +F M + NLV WN + + ++S
Sbjct: 587 RQRIPSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMS 646
Query: 741 FLPQIIHHGLTPDSVSITNSLVA 809
++ G+ PD ++ + L +
Sbjct: 647 LFDEMRSFGIAPDDITFISLLTS 669
>ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g40720 gi|330254774|gb|AEC09868.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 860
Score = 269 bits (687), Expect = 7e-70
Identities = 133/292 (45%), Positives = 200/292 (68%), Gaps = 2/292 (0%)
Frame = +3
Query: 15 IGDAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSA 194
+G+A+ VF V+DK + +WNAM++ ++YG+ AL+ + MR + FT++N++S
Sbjct: 323 VGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISC 382
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
C + Y++G+ VH E+ KRP+ S++ ++SALLT+Y+KCG + DA LVF +++E+D
Sbjct: 383 CSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDM--- 439
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQAD--GVRLDSTIVTSILNATAALEHAELGRLIH 548
AWGS++SG C N K+++ L +F M+ D ++ DS I+TS+ NA A LE G +H
Sbjct: 440 VAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVH 499
Query: 549 GFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPE 728
G +K G+ + FVG +LID+Y+KC LP+ A VF+ M +N+VAWNS+ CY+RN LPE
Sbjct: 500 GSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPE 559
Query: 729 LSISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQSD 884
LSI ++ G+ PDSVSIT+ LVAISS +LLKGK++HGY +RL I SD
Sbjct: 560 LSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSD 611
Score = 137 bits (344), Expect = 4e-30
Identities = 84/278 (30%), Positives = 149/278 (53%), Gaps = 2/278 (0%)
Frame = +3
Query: 21 DAK*VFDGVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFS--GLQSGHFTITNILSA 194
DA VF + +K++V W ++IS + +AL+ + +M+ L+ +T++ +A
Sbjct: 426 DAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNA 485
Query: 195 CGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHT 374
C + + FG +VHG MIK + + V S+L+ +Y+KCG E A VF+++ T +
Sbjct: 486 CAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMS---TENM 542
Query: 375 FAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGF 554
AW SM+S + N E ++LF M + G+ DS +TS+L A ++ G+ +HG+
Sbjct: 543 VAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGY 602
Query: 555 AMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELS 734
++ G+ D + ALIDMY KC AE++F KM K+L+ WN + Y + +
Sbjct: 603 TLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITA 662
Query: 735 ISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAV 848
+S ++ G +PD V+ + + A + + +GK +
Sbjct: 663 LSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNI 700
Score = 119 bits (298), Expect = 9e-25
Identities = 78/282 (27%), Positives = 143/282 (50%), Gaps = 2/282 (0%)
Frame = +3
Query: 42 GVLDKEIVLWNAMISECIFSNYGHQALENYIEMRFSGLQSGHFTITNILSACGTINSY-- 215
GV +++ +WN+MI + + + M G++ F+++ ++S ++
Sbjct: 127 GVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFRR 186
Query: 216 DFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFSTIKERDTGHTFAWGSMV 395
+ G+++HG M++ + + + +++AL+ MY K G + DA VF I+ D + W M+
Sbjct: 187 EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIE--DKSNVVLWNVMI 244
Query: 396 SGFCHNMKYEKGLNLFKAMQADGVRLDSTIVTSILNATAALEHAELGRLIHGFAMKNGMS 575
GF + E L+L+ + + V+L ST T L A + E++ GR IH +K G+
Sbjct: 245 VGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLH 304
Query: 576 FDAFVGCALIDMYAKCVLPDGAESVFSKMPEKNLVAWNSITCCYNRNALPELSISFLPQI 755
D +V +L+ MY+KC + AE+VFS + +K L WN++ Y N ++ +
Sbjct: 305 NDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFM 364
Query: 756 IHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYIRLYIQS 881
+ PDS +++N + S L GK+VH + IQS
Sbjct: 365 RQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQS 406
Score = 106 bits (265), Expect = 6e-21
Identities = 68/247 (27%), Positives = 123/247 (49%), Gaps = 8/247 (3%)
Frame = +3
Query: 168 FTITNILSACGTINSYDFGRRVHGEMIKRPV*SSTDVQSALLTMYAKCGYNEDAKLVFST 347
FT ++L AC + + +G+ +HG ++ + ++L+ MY KCG+ + A VF
Sbjct: 61 FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120
Query: 348 IKERDTG----HTFAWGSMVSGFCHNMKYEKGLNLFKAMQADGVRLDS---TIVTSILNA 506
+ +G W SM+ G+ ++++G+ F+ M GVR D+ +IV S++
Sbjct: 121 WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCK 180
Query: 507 TAALEHAELGRLIHGFAMKNGMSFDAFVGCALIDMYAKCVLPDGAESVFSKMPEK-NLVA 683
E G+ IHGF ++N + D+F+ ALIDMY K L A VF ++ +K N+V
Sbjct: 181 EGNFRREE-GKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVL 239
Query: 684 WNSITCCYNRNALPELSISFLPQIIHHGLTPDSVSITNSLVAISSLTTLLKGKAVHGYYI 863
WN + + + + E S+ ++ + S S T +L A S G+ +H +
Sbjct: 240 WNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVV 299
Query: 864 RLYIQSD 884
++ + +D
Sbjct: 300 KMGLHND 306