BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029017
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containi...   120   9e-26
gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]   103   1e-20
ref|XP_003594983.1| Pentatricopeptide repeat-containing protein ...   103   1e-20
dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]    100   2e-19
gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japo...    99   4e-19

>ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
           gi|297737690|emb|CBI26891.3| unnamed protein product
           [Vitis vinifera]
          Length = 610

 Score =  120 bits (302), Expect = 9e-26
 Identities = 57/105 (54%), Positives = 78/105 (74%)
 Frame = +2

Query: 2   VKFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLV 181
           VKFGE+  AE+LF SMV RDLV W+AL++   Q G++ KA++ FR+M + G+KP+ +T+V
Sbjct: 181 VKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIV 240

Query: 182 SALSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
           SALSAC  LGCL+ G EI +F  E    SN+ ++NARLD+ AKCG
Sbjct: 241 SALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCG 285



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 28/85 (32%), Positives = 52/85 (61%)
 Frame = +2

Query: 5   KFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLVS 184
           K G++  A  LF+ M  R+++ WS ++  YA  G ++KA+ +F +M+  GV+PN +T ++
Sbjct: 283 KCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLA 342

Query: 185 ALSACARLGCLQIGNEIDKFIVEGE 259
            LSAC+  G +  G +   F+ + +
Sbjct: 343 VLSACSHTGRVNEGWQYFNFMAQSD 367


>gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  103 bits (258), Expect = 1e-20
 Identities = 46/104 (44%), Positives = 70/104 (67%)
 Frame = +2

Query: 5   KFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLVS 184
           K GE+ S+  +F+ M +RD + W+A +S YAQ G AD+AI +F  M+ NGV PN +TL +
Sbjct: 266 KCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTA 325

Query: 185 ALSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
            LSACA +G L +G ++D++      Q ++F+  A +D+YAKCG
Sbjct: 326 VLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCG 369



 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/103 (40%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = +2

Query: 11  GEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVF-RQMEVNGVKPNCMTLVSA 187
           GE   A  +F+ +  +DLV W++L+S YA+ G+A +A++VF R  E +G +P+ M+LVS 
Sbjct: 166 GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSV 225

Query: 188 LSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
           L AC  LG L++G  ++ F+VE   + N +I +A + +Y+KCG
Sbjct: 226 LGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG 268


>ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355484031|gb|AES65234.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  103 bits (258), Expect = 1e-20
 Identities = 46/104 (44%), Positives = 70/104 (67%)
 Frame = +2

Query: 5   KFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLVS 184
           K GE+ S+  +F+ M +RD + W+A +S YAQ G AD+AI +F  M+ NGV PN +TL +
Sbjct: 266 KCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTA 325

Query: 185 ALSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
            LSACA +G L +G ++D++      Q ++F+  A +D+YAKCG
Sbjct: 326 VLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCG 369



 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 42/103 (40%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
 Frame = +2

Query: 11  GEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVF-RQMEVNGVKPNCMTLVSA 187
           GE   A  +F+ +  +DLV W++L+S YA+ G+A +A++VF R  E +G +P+ M+LVS 
Sbjct: 166 GENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSV 225

Query: 188 LSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
           L AC  LG L++G  ++ F+VE   + N +I +A + +Y+KCG
Sbjct: 226 LGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCG 268


>dbj|BAK07747.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 623

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 43/104 (41%), Positives = 73/104 (70%)
 Frame = +2

Query: 5   KFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLVS 184
           K GE+A A  +F+++ ++D V W+AL++ YAQ G + +AI +F  M   G +P+ +TLV 
Sbjct: 280 KCGEMAEARRVFDAIAHKDNVAWNALITGYAQNGMSKEAISLFHSMRQAGARPDKITLVG 339

Query: 185 ALSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
            LSACA +G L++G E+D++ ++  F SN+++  A +D+Y+KCG
Sbjct: 340 VLSACAAVGALELGTELDRYALQRGFYSNVYVGTALVDMYSKCG 383



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
 Frame = +2

Query: 11  GEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNG-VKPNCMTLVSA 187
           G   +A  +F+ ++ RD+V W++++  Y   G  D A ++FR M   G V PN +T+   
Sbjct: 180 GRPRAARRVFDGILRRDVVSWNSMIKAYQAAGMKDDAARMFRAMVAEGAVPPNAVTVAVV 239

Query: 188 LSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
           L+AC   G L +G  +++++     +    + +A + +Y KCG
Sbjct: 240 LAACRDAGDLALGRWLEEWVKSVGMEVGSLVGSALVGMYEKCG 282


>gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
          Length = 746

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 40/104 (38%), Positives = 74/104 (71%)
 Frame = +2

Query: 5   KFGEVASAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNGVKPNCMTLVS 184
           K GE+A A  +F++++++D+V W+A+++ YAQ G +++AI +F  M + G++P+ +TL  
Sbjct: 301 KCGEIAEARRVFDTIIDKDIVAWNAMITGYAQNGMSNEAISLFHSMRIAGMRPDKITLAG 360

Query: 185 ALSACARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
            LSAC+ +G L++G+E+D +       SN+++  A +D+YAKCG
Sbjct: 361 VLSACSAVGALELGSELDGYASRRGLYSNVYVGTALVDMYAKCG 404



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
 Frame = +2

Query: 23  SAEYLFESMVNRDLVCWSALMSTYAQYGYADKAIKVFRQMEVNG-VKPNCMTLVSALSAC 199
           +A  +F+ +  RD+V W+A+M  Y + G   +  ++FR M   G V PN +T+   L+AC
Sbjct: 205 AARKVFDGIPTRDVVSWNAMMKAYGRVGMNGEVGRMFRDMVKEGTVAPNVVTVAVVLAAC 264

Query: 200 ARLGCLQIGNEIDKFIVEGEFQSNMFINNARLDLYAKCG 316
              G L +G  ++++      + +  + +A L +Y KCG
Sbjct: 265 RDQGDLVLGRWVEEWSWSARMEMDSLVGSALLGMYEKCG 303