BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00029001
         (951 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22750.3| unnamed protein product [Vitis vinifera]              116   9e-24
ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|2...    76   1e-11
ref|XP_002510793.1| conserved hypothetical protein [Ricinus comm...    70   7e-10
ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana] ...    57   8e-06
gb|ACI22656.1| shortage in chiasmata [Arabidopsis thaliana]            57   8e-06

>emb|CBI22750.3| unnamed protein product [Vitis vinifera]
          Length = 1591

 Score =  116 bits (290), Expect = 9e-24
 Identities = 102/370 (27%), Positives = 159/370 (42%), Gaps = 55/370 (14%)
 Frame = +3

Query: 3    LCRYGEQEESKSGVTECXXXXXXXXXXXXXXX-IYSQNKRQKCVMDPQVIDISINEYFGP 179
            LCRYGE+E+SKSG+TEC                I S+ K+ KC+  P   DI  + +   
Sbjct: 1129 LCRYGEREDSKSGITECSSSVSSAPDSENFHYKIESERKKLKCIGSPSKNDIHRDGFLNF 1188

Query: 180  ETLNQSTD---------------------------GNLKASSSAHHTQ---PNQARSFCN 269
            E+LNQ T+                             +K SSS+ + +   P Q      
Sbjct: 1189 ESLNQFTNFTDFGLNTSQVSKQYGDSWMSNGPEMLDGIKHSSSSLNNKWFGPKQGLEMAT 1248

Query: 270  SRDASDQIDGFDFSL--NDKLLYQGRCPNTSMMDNLAKKTRNGINRSENGYNGXXXXXXX 443
             ++ S      D  +    ++LY+ + P  S+ D L  + R     + + +N        
Sbjct: 1249 MKNPSTLFKPNDSQVLKGSEMLYEVKKPGLSLNDKLLGERRGSDAATRDWHNNNNPEDLH 1308

Query: 444  XXXXXXXFCIEENSLLRR---------------LEKRKNPVVGSSSSARRLSFGTDKYPD 578
                     + ++ L+                 LE  ++P  G S ++RRLSF    +P 
Sbjct: 1309 NDFKGEVIDLNDSFLIGEDFSSIAKSSRFSPLVLELEEDPAAGKSKTSRRLSFSNSSHPT 1368

Query: 579  FPTIEEINSG--IWNCLKNQNRKF-TGNFDLTNIDSDKEDMLPLKTRGEPLMEKTTQRSK 749
            FPT  EINS   IW  LK+Q +    G  +  + +  K D LP+K + + L+E +  RS 
Sbjct: 1369 FPTAAEINSNSDIWTTLKDQKQSLGKGIVEFEDTEFGKGD-LPMKHQKQ-LLEGSMHRSA 1426

Query: 750  SN----SLRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEKSRMHQEALLSHNA 917
             +    S ++  T  Y   P S   +S  LQQ SPWT EFLN+V+EKS++ Q++L    +
Sbjct: 1427 KDFCGPSFQEKDTH-YSGTPLSNALNSVHLQQGSPWTIEFLNRVREKSKLRQQSLPCDRS 1485

Query: 918  ATLCGYPNQI 947
                 Y + I
Sbjct: 1486 GPCFEYSDNI 1495


>ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|222858894|gb|EEE96441.1|
            predicted protein [Populus trichocarpa]
          Length = 1337

 Score = 76.3 bits (186), Expect = 1e-11
 Identities = 50/131 (38%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
 Frame = +3

Query: 531  SSSARRLSFGTDKYPDFPTIEEINS--GIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLK 704
            S +ARRLSFG + +P+ PT  E NS   +W  +++  ++   N     ID DK + +P+K
Sbjct: 1098 SKAARRLSFGKNSHPNNPTAAEKNSCPDLWTPIESDRQRLPQNRGDPIID-DKHEKVPVK 1156

Query: 705  TRGEPLMEKTTQRSKSNSLR----QNVTRPYGI-MPSSEVTHSPGLQQQSPWTTEFLNKV 869
             R   L E  T R+   S R    + ++   G   P S+  HS   Q  SPWT EFLN+V
Sbjct: 1157 PRKNLLEEAFTLRAAGKSTRFPFEEEISHCGGSGTPLSKAIHSAHPQPGSPWTIEFLNRV 1216

Query: 870  KEKSRMHQEAL 902
            +EKSR+ Q++L
Sbjct: 1217 REKSRLRQQSL 1227


>ref|XP_002510793.1| conserved hypothetical protein [Ricinus communis]
            gi|223549908|gb|EEF51395.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1318

 Score = 70.1 bits (170), Expect = 7e-10
 Identities = 45/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
 Frame = +3

Query: 531  SSSARRLSFGTDKYPDFPTIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 710
            S +AR+LSFG +++P FPT   INS   + L++       +    N  SD +  +PLK  
Sbjct: 1100 SKAARKLSFGRNRHPTFPTAAAINSN--SELRSSENDHGHSLQQNNDYSDCD--MPLKRP 1155

Query: 711  GE----PLMEKTTQRSKSNSLRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 878
             E     L + +T+ +K+   R+ ++  +G  P S+  HS   Q  SPWT EFLN+++EK
Sbjct: 1156 KEIVKDVLRQGSTRNAKALPFREEMSH-FGGTPLSKAIHSANPQPGSPWTIEFLNRIREK 1214

Query: 879  SRMHQEAL 902
             R+ Q++L
Sbjct: 1215 GRLPQQSL 1222


>ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana]
            gi|332008813|gb|AED96196.1| shortage in chiasmata 1
            [Arabidopsis thaliana]
          Length = 1594

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
 Frame = +3

Query: 531  SSSARRLSFGTDKYPDFPTIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 710
            S S+R+LSF     P+FP   +I+S        ++ K+  N  L        D  P K +
Sbjct: 1377 SKSSRKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGY----ADNYPAKRQ 1432

Query: 711  GEPLMEKTTQRSKSNS----LRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 878
               L E  T+RS   +     R+ ++  +G  P S    S    Q SPWT +FLN+V+E+
Sbjct: 1433 RTLLEEVLTRRSAVPTTELPFREEISH-FGGSPLSNAIRSSNQVQSSPWTVDFLNRVRER 1491

Query: 879  S--RMHQEALLSHNAATLCGYPNQIE 950
            S  R  Q++L S+ +      P  I+
Sbjct: 1492 SRARKQQQSLPSYASPPSLETPGNIK 1517


>gb|ACI22656.1| shortage in chiasmata [Arabidopsis thaliana]
          Length = 1594

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
 Frame = +3

Query: 531  SSSARRLSFGTDKYPDFPTIEEINSGIWNCLKNQNRKFTGNFDLTNIDSDKEDMLPLKTR 710
            S S+R+LSF     P+FP   +I+S        ++ K+  N  L        D  P K +
Sbjct: 1377 SKSSRKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGY----ADNYPAKRQ 1432

Query: 711  GEPLMEKTTQRSKSNS----LRQNVTRPYGIMPSSEVTHSPGLQQQSPWTTEFLNKVKEK 878
               L E  T+RS   +     R+ ++  +G  P S    S    Q SPWT +FLN+V+E+
Sbjct: 1433 RTLLEEVLTRRSAVPTTELPFREEISH-FGGSPLSNAIRSSNQVQSSPWTVDFLNRVRER 1491

Query: 879  S--RMHQEALLSHNAATLCGYPNQIE 950
            S  R  Q++L S+ +      P  I+
Sbjct: 1492 SRARKQQQSLPSYASPPSLETPGNIK 1517