BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028979
         (275 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containi...   141   6e-32
emb|CBI30711.3| unnamed protein product [Vitis vinifera]              141   6e-32
ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containi...   139   3e-31
ref|XP_002870024.1| pentatricopeptide repeat-containing protein ...   137   9e-31
ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [S...   135   3e-30

>ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/91 (73%), Positives = 78/91 (85%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           NG  LD +V NALVDMY KCGAL LARLLFDM+P KDLVSWTVMIAGYGMHG G +AI  
Sbjct: 481 NGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 540

Query: 183 FDQMRSTGLQPDGVSFVAILYACSHSGLLVE 275
           F++MR++G++PD VSF++ILYACSHSGLL E
Sbjct: 541 FNEMRNSGIEPDEVSFISILYACSHSGLLDE 571



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 48/79 (60%)
 Frame = +3

Query: 33  NALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTGLQ 212
           N L+DMY+K G L  A  +F+ M  + +VSWT MIAGY   G    ++ +F +M   G+ 
Sbjct: 290 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGIS 349

Query: 213 PDGVSFVAILYACSHSGLL 269
           PD  +   IL+AC+ +GLL
Sbjct: 350 PDIFTITTILHACACTGLL 368



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 33/84 (39%), Positives = 51/84 (60%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           N +  D +V NAL+DMYAKCG++  A  +F  M  KD+VSW  MI GY  +    +A+ +
Sbjct: 381 NKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNL 440

Query: 183 FDQMRSTGLQPDGVSFVAILYACS 254
           F +M+    +P+ ++   IL AC+
Sbjct: 441 FVEMQYNS-KPNSITMACILPACA 463



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/101 (30%), Positives = 56/101 (55%), Gaps = 18/101 (17%)
 Frame = +3

Query: 24  YVYNALVDMYAKCG----ALLL--------------ARLLFDMMPAKDLVSWTVMIAGYG 149
           +++N L++ YAK G    +L L              AR LFD +  +D++SW  MI+GY 
Sbjct: 168 FLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYV 227

Query: 150 MHGCGKDAITIFDQMRSTGLQPDGVSFVAILYACSHSGLLV 272
            +G  +  + +F+QM   G+  D  + V+++  CS++G+L+
Sbjct: 228 SNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLL 268


>emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/91 (73%), Positives = 78/91 (85%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           NG  LD +V NALVDMY KCGAL LARLLFDM+P KDLVSWTVMIAGYGMHG G +AI  
Sbjct: 354 NGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAA 413

Query: 183 FDQMRSTGLQPDGVSFVAILYACSHSGLLVE 275
           F++MR++G++PD VSF++ILYACSHSGLL E
Sbjct: 414 FNEMRNSGIEPDEVSFISILYACSHSGLLDE 444



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 33  NALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTGLQ 212
           N L+DMY+K G L  A  +F+ M  + +VSWT MIAGY   G    ++ +F +M    L 
Sbjct: 263 NCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF 322

Query: 213 PDGVSFVAILYACS 254
           P+ ++   IL AC+
Sbjct: 323 PNSITMACILPACA 336


>ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
           gi|449500809|ref|XP_004161200.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  139 bits (349), Expect = 3e-31
 Identities = 66/91 (72%), Positives = 75/91 (82%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           NG   D YV NA+VDMY KCG L+LAR LFDM+P KDLVSWTVMIAGYGMHG G +AI  
Sbjct: 583 NGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINT 642

Query: 183 FDQMRSTGLQPDGVSFVAILYACSHSGLLVE 275
           F+QMR TG++PD VSF++ILYACSHSGLL E
Sbjct: 643 FNQMRMTGIEPDEVSFISILYACSHSGLLDE 673



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = +3

Query: 33  NALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTGLQ 212
           N L+DMY+KCG L  A  +F+ M  K +VSWT MI GY   G    AI +FD+M+S G+ 
Sbjct: 392 NTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVV 451

Query: 213 PDGVSFVAILYACSHSGLL 269
           PD  +  +IL AC+ +G L
Sbjct: 452 PDVYAVTSILNACAINGNL 470



 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 36/84 (42%), Positives = 52/84 (61%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           N L  +S+V NAL DMYAKCG++  A  +F  M  KD++SW  MI GY  +    +A+T+
Sbjct: 483 NNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTL 542

Query: 183 FDQMRSTGLQPDGVSFVAILYACS 254
           F +M+    +PDG +   IL AC+
Sbjct: 543 FAEMQRES-KPDGTTVACILPACA 565



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 27/80 (33%), Positives = 45/80 (56%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           +G+ +D  +   LV MY KCG L   R++FD +    +  W +MI+ Y   G   ++I +
Sbjct: 179 SGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINL 238

Query: 183 FDQMRSTGLQPDGVSFVAIL 242
           F QM   G++P+  +F +IL
Sbjct: 239 FKQMLELGIKPNSYTFSSIL 258


>ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315860|gb|EFH46283.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 871

 Score =  137 bits (345), Expect = 9e-31
 Identities = 65/91 (71%), Positives = 78/91 (85%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           NG   D +V N+LVDMYAKCGALLLARLLFD + +KDLVSWTVMIAGYGMHG GK+AI +
Sbjct: 528 NGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIAL 587

Query: 183 FDQMRSTGLQPDGVSFVAILYACSHSGLLVE 275
           F+QMR  G++PD +SFV++LYACSHSGL+ E
Sbjct: 588 FNQMRQAGIEPDEISFVSLLYACSHSGLVDE 618



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 33/81 (40%), Positives = 51/81 (62%)
 Frame = +3

Query: 33  NALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTGLQ 212
           N L+DMY+KCG L  A+++F  M  + +VS+T MIAGY   G   +A+ +F++M   G+ 
Sbjct: 335 NTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGIS 394

Query: 213 PDGVSFVAILYACSHSGLLVE 275
           PD  +  A+L  C+ + LL E
Sbjct: 395 PDVYTVTAVLNCCARNRLLDE 415



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   NGLPLDSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITI 182
           N +  D +V NAL+DMYAKCG++  A L+F  M  KD++SW  +I GY  +    +A+++
Sbjct: 426 NDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSL 485

Query: 183 FDQMR-STGLQPDGVSFVAILYACS 254
           F+ +       PD  +   +L AC+
Sbjct: 486 FNLLLVEKRFSPDERTVACVLPACA 510


>ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
            gi|241942201|gb|EES15346.1| hypothetical protein
            SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  135 bits (340), Expect = 3e-30
 Identities = 60/86 (69%), Positives = 72/86 (83%)
 Frame = +3

Query: 18   DSYVYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMR 197
            DSY  NALVDMY KCGALL+AR+LFD +  K+L+SWT+MIAGYGMHGCGKDA+ +F+QMR
Sbjct: 746  DSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMR 805

Query: 198  STGLQPDGVSFVAILYACSHSGLLVE 275
             +G++PD  SF AILYAC HSGL  E
Sbjct: 806  GSGVEPDTASFSAILYACCHSGLTAE 831



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = +3

Query: 27  VYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTG 206
           V NAL+ +Y++CG +  A  +FD M A+D +SW   I+GY  +G    A+ +F +M S G
Sbjct: 235 VANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEG 294

Query: 207 LQPDGVSFVAILYACSHSG 263
            +   V+ +++L AC+  G
Sbjct: 295 TEISSVTVLSVLPACAELG 313



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/78 (37%), Positives = 46/78 (58%)
 Frame = +3

Query: 27  VYNALVDMYAKCGALLLARLLFDMMPAKDLVSWTVMIAGYGMHGCGKDAITIFDQMRSTG 206
           V NAL+  YAK   +  A L+FD MP +D +SW  +I+G   +G   +AI +F +M   G
Sbjct: 447 VCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQG 506

Query: 207 LQPDGVSFVAILYACSHS 260
            + D  + +++L AC+ S
Sbjct: 507 HELDSTTLLSVLPACARS 524