BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028929
         (250 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]     60   2e-07
gb|ABG37668.1| gag protein [Populus trichocarpa]                       59   3e-07
gb|ABG37657.1| integrase [Populus trichocarpa]                         59   3e-07
gb|ABG37660.1| integrase [Populus trichocarpa]                         57   2e-06
gb|ABG37671.1| integrase [Populus trichocarpa]                         57   2e-06

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 30/49 (61%), Positives = 36/49 (73%)
 Frame = +3

Query: 102 YIPKAPFPQRLIQAKKSSNLNEIMEMFKQVQINILLLDAIKQVLSYAKF 248
           Y P APFP RL   K S  + +I+E FKQV+INI LLDAI+Q+ SYAKF
Sbjct: 456 YRPVAPFPDRLKPRKNSPQVEKILETFKQVKINIPLLDAIEQIPSYAKF 504


>gb|ABG37668.1| gag protein [Populus trichocarpa]
          Length = 1886

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/66 (50%), Positives = 43/66 (65%)
 Frame = +3

Query: 51  RKGVEPPTAVETNSVPSYIPKAPFPQRLIQAKKSSNLNEIMEMFKQVQINILLLDAIKQV 230
           ++GVE     E    P   P  PFP  + + +K ++ +EI+E FKQV+INI LLDAIKQV
Sbjct: 229 KEGVESKHCKEKTDSP---PALPFPHAMSKQRKVNHNSEILETFKQVRINIPLLDAIKQV 285

Query: 231 LSYAKF 248
            SYAKF
Sbjct: 286 PSYAKF 291


>gb|ABG37657.1| integrase [Populus trichocarpa]
          Length = 1738

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 33/66 (50%), Positives = 43/66 (65%)
 Frame = +3

Query: 51  RKGVEPPTAVETNSVPSYIPKAPFPQRLIQAKKSSNLNEIMEMFKQVQINILLLDAIKQV 230
           ++GVE     E    P   P  PFP  + + +K ++ +EI+E FKQV+INI LLDAIKQV
Sbjct: 81  KEGVESKHCKEKTDSP---PALPFPHAMSKQRKVNHNSEILETFKQVRINIPLLDAIKQV 137

Query: 231 LSYAKF 248
            SYAKF
Sbjct: 138 PSYAKF 143


>gb|ABG37660.1| integrase [Populus trichocarpa]
          Length = 879

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/66 (48%), Positives = 41/66 (62%)
 Frame = +3

Query: 51  RKGVEPPTAVETNSVPSYIPKAPFPQRLIQAKKSSNLNEIMEMFKQVQINILLLDAIKQV 230
           ++GVE     E    P   P  PFP  + + +K ++ +EI E FK V+INI LLDAIKQV
Sbjct: 34  KEGVESEHCKEKTDSP---PALPFPHAMTKQRKVNHNSEIFETFKHVRINIPLLDAIKQV 90

Query: 231 LSYAKF 248
            SYAKF
Sbjct: 91  PSYAKF 96


>gb|ABG37671.1| integrase [Populus trichocarpa]
          Length = 1332

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = +3

Query: 54  KGVEPPTAVETNSVPSYIPKAPFPQRLIQAKKSSNLNEIMEMFKQVQINILLLDAIKQVL 233
           KG E   +         +P  PFP  + + +K ++ +EI E FKQV+INI LLDAIK+V 
Sbjct: 79  KGKEEVESEHCKEKTDSLPAHPFPHAMTKQRKVNHNSEIFETFKQVRINIPLLDAIKEVP 138

Query: 234 SYAKF 248
           SYAKF
Sbjct: 139 SYAKF 143