BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028925
         (891 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containin...   160   5e-37
ref|XP_002514479.1| nucleic acid binding protein, putative [Rici...   152   1e-34
emb|CBI38961.3| unnamed protein product [Vitis vinifera]              149   9e-34
ref|XP_004157135.1| PREDICTED: zinc finger CCCH domain-containin...   144   4e-32
ref|XP_002889020.1| zinc finger (CCCH-type) family protein [Arab...   140   4e-31

>ref|XP_002274515.2| PREDICTED: zinc finger CCCH domain-containing protein 16-like
           [Vitis vinifera]
          Length = 383

 Score =  160 bits (404), Expect = 5e-37
 Identities = 96/262 (36%), Positives = 132/262 (50%), Gaps = 36/262 (13%)
 Frame = -1

Query: 891 KTVPCRNLLTKGFCSYGDRCKFSHQKQHQPI------------------LQKRTTTTLLH 766
           K  PCRN   +G C YG+RCKF H  Q QP                   +Q++ +     
Sbjct: 4   KKEPCRNF-QRGSCQYGERCKFLHVTQQQPKPNVSGFGAQTSSNFQHTNVQQQRSNPFGF 62

Query: 765 QPKTNTQFKPSRNRWVRNASPEAPVVKHVSSKANHQQQTTKAANQERVENHTCTDDIELC 586
             ++N+  KP  N+W R +    P+    SS ++ Q       NQ +  NH CTD  E C
Sbjct: 63  GVQSNSLPKPFENKWTRFS----PLTTGSSSSSSRQSD-----NQVQPANHKCTDP-ESC 112

Query: 585 KKQVFEDMQCERPLWRLTCYGHCKYGPCDIGGDVSYEELRANAYDDVETGLSMSAVVDKE 406
           K+Q+ ED + ERP+W+LTCYGHCK  PCDI GD+SYEELR  AYDD   GLS+ ++V++E
Sbjct: 113 KRQIVEDFEHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAAYDDAGRGLSLQSIVERE 172

Query: 405 KNIQKSKSIQFENFLNCVSAA------------------SSTAQNKVTPTVSTFRELGLV 280
           +++  SK I+F++ L    AA                  S TAQN   P+ S+F +L   
Sbjct: 173 RSLLNSKLIEFDSLLRKPYAAPPNSTLAIQSPAPNPDASSLTAQNNTPPSASSFSQLSTS 232

Query: 279 TNQGVKETAPLASSNTSTQKES 214
            N G        S+N   Q  S
Sbjct: 233 PNMGFGTRPSTPSNNAFGQSNS 254


>ref|XP_002514479.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223546378|gb|EEF47879.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 282

 Score =  152 bits (384), Expect = 1e-34
 Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 32/238 (13%)
 Frame = -1

Query: 879 CRNLLTKGFCSYGDRCKFSH---QKQH----------QPILQKRTTTTLLHQPKTNTQFK 739
           CRN   +G C YG+RCKF H   Q+Q           Q   Q ++++      ++ +  K
Sbjct: 8   CRNF-QRGSCQYGERCKFLHVNNQQQQSNNNSFGFGSQQKQQNQSSSPFGFGTQSKSSTK 66

Query: 738 PSRNRWVRNASPEAPVVKHVSSKANHQQQTTKAANQERVENHTCTDDIELCKKQVFEDMQ 559
           P  N+W R +    P+    ++ ++ Q       NQ +  NH CTD  + CK+Q+ ED Q
Sbjct: 67  PFENKWTRFS----PISNAAATPSSRQPD-----NQPQPANHKCTDP-DSCKRQIAEDFQ 116

Query: 558 CERPLWRLTCYGHCKYGPCDIGGDVSYEELRANAYDDVETGLSMSAVVDKEKNIQKSKSI 379
            E+PLW+LTCYGH K GPCDIGGDVSYEELRA AYD+ + GL++ ++V++E+N+  SK I
Sbjct: 117 NEKPLWKLTCYGHSKNGPCDIGGDVSYEELRALAYDEAKHGLTLQSIVERERNLLSSKLI 176

Query: 378 QFENFLNCVSAAS-------------------STAQNKVTPTVSTFRELGLVTNQGVK 262
           +FEN L    AA                     + QN   P+VS+F +LG   N   +
Sbjct: 177 EFENLLRNPYAAPPKSAFSQSPFPGVTPNAILPSGQNNPPPSVSSFSQLGASLNMATR 234


>emb|CBI38961.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  149 bits (376), Expect = 9e-34
 Identities = 93/262 (35%), Positives = 126/262 (48%), Gaps = 49/262 (18%)
 Frame = -1

Query: 852 CSYGDRCKFSHQKQHQPI-----LQKRTTTTLLH----QPKTN----------------- 751
           C YG+RCKF H  Q QP         +T++   H    Q ++N                 
Sbjct: 14  CQYGERCKFLHVTQQQPKPNVSGFGAQTSSNFQHTNVQQQRSNPFGFGVQSNSLPKGTSD 73

Query: 750 -----TQFKPSRNRWVRNASPEAPVVKHVSSKANHQQQTTKAANQERVENHTCTDDIELC 586
                  FKP  N+W R +    P+    SS ++ Q       NQ +  NH CTD  E C
Sbjct: 74  FGSKQNHFKPFENKWTRFS----PLTTGSSSSSSRQSD-----NQVQPANHKCTDP-ESC 123

Query: 585 KKQVFEDMQCERPLWRLTCYGHCKYGPCDIGGDVSYEELRANAYDDVETGLSMSAVVDKE 406
           K+Q+ ED + ERP+W+LTCYGHCK  PCDI GD+SYEELR  AYDD   GLS+ ++V++E
Sbjct: 124 KRQIVEDFEHERPIWKLTCYGHCKSAPCDIVGDISYEELRLAAYDDAGRGLSLQSIVERE 183

Query: 405 KNIQKSKSIQFENFLNCVSAA------------------SSTAQNKVTPTVSTFRELGLV 280
           +++  SK I+F++ L    AA                  S TAQN   P+ S+F +L   
Sbjct: 184 RSLLNSKLIEFDSLLRKPYAAPPNSTLAIQSPAPNPDASSLTAQNNTPPSASSFSQLSTS 243

Query: 279 TNQGVKETAPLASSNTSTQKES 214
            N G        S+N   Q  S
Sbjct: 244 PNMGFGTRPSTPSNNAFGQSNS 265


>ref|XP_004157135.1| PREDICTED: zinc finger CCCH domain-containing protein 16-like
           [Cucumis sativus]
          Length = 360

 Score =  144 bits (362), Expect = 4e-32
 Identities = 88/238 (36%), Positives = 122/238 (51%), Gaps = 30/238 (12%)
 Frame = -1

Query: 891 KTVPCRNLLTKGFCSYGDRCKFSHQ----KQHQP------ILQKRTTTTLLHQPKTNTQF 742
           K  PCR+   +G C YG+RCKF H     +Q +P      +     +  +        Q+
Sbjct: 4   KKQPCRDF-QRGTCQYGERCKFLHATQQAQQQKPNPFGFGVPNNGQSKAVADFGSKQNQY 62

Query: 741 KPSRNRWVRNASPEAPVVKHVSSKANHQQQTTKAANQERVENHTCTDDIELCKKQVFEDM 562
           KP  N+W R ++P                Q+ K  N     NH CTD  E CK+Q+ ED 
Sbjct: 63  KPFENKWTRPSTPAG------------NAQSRKPDNHLPSSNHKCTDG-ESCKRQIAEDF 109

Query: 561 QCERPLWRLTCYGHCKYGPCDIGGDVSYEELRANAYDDVETGLSMSAVVDKEKNIQKSKS 382
           Q ERPLW+LTCYGH K  PCDI GDVSYEELR  AYD+ + G+S+ ++V++E+N+  SK 
Sbjct: 110 QNERPLWKLTCYGHNKNEPCDIVGDVSYEELRTIAYDEAKRGISLQSIVERERNLLNSKL 169

Query: 381 IQFENFL---------------NCVSAASS-----TAQNKVTPTVSTFRELGLVTNQG 268
            +FE  L               +  S  +S     +AQN  TP++S+F +LG   N G
Sbjct: 170 AEFEGLLLKPYVTPSNRAPGNQSSFSGTNSPSILPSAQNN-TPSLSSFSQLGASLNTG 226


>ref|XP_002889020.1| zinc finger (CCCH-type) family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297334861|gb|EFH65279.1| zinc finger
           (CCCH-type) family protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 441

 Score =  140 bits (353), Expect = 4e-31
 Identities = 87/264 (32%), Positives = 126/264 (47%), Gaps = 27/264 (10%)
 Frame = -1

Query: 879 CRNLLTKGFCSYGDRCKFSHQKQHQPI------LQKRTTTTLLHQPKTN----------- 751
           CRN   +G C YG+ C+F H +Q +P        Q++       Q  +N           
Sbjct: 6   CRNF-QRGSCRYGENCRFLHPQQAKPNNPFGFGTQQQPQQQQQQQNSSNPFGFGVQGGGS 64

Query: 750 ---TQFKPSRNRWVRNASPEAPVVKHVSSKANHQQQTTKAANQERVENHTCTDDIELCKK 580
               QF+P  N W R AS          +         +A  Q +  +H CTD    CK+
Sbjct: 65  SRPNQFQPFENTWSRTAS--------TPTGGGGAAAAQQAGKQTQPADHKCTDPAA-CKR 115

Query: 579 QVFEDMQCERPLWRLTCYGHCKYGPCDIGGDVSYEELRANAYDDVETGLSMSAVVDKEKN 400
            + +D + ERP+W+LTCYGH KY PCD+ GD+SYEELRA AY++ + G+ + ++V++E+N
Sbjct: 116 VMQDDFKNERPMWKLTCYGHWKYFPCDVTGDISYEELRAMAYEEAKRGIPLQSIVERERN 175

Query: 399 IQKSKSIQFENFLNCVSAASSTAQNK--VTPTVSTFRELGLVTN-----QGVKETAPLAS 241
           +Q SK  +FENFL      S TA        T S F   G + +      G  +    A+
Sbjct: 176 LQNSKIAEFENFLRNPYKGSVTANQSPFAATTPSIFPPTGQINSSPPGFSGFNQQTAFAN 235

Query: 240 SNTSTQKESGNSRASVARRPQSAN 169
           +NT     SG   A  +   QS N
Sbjct: 236 TNTGGLSSSGPPNAFASFNQQSNN 259