BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028899
         (350 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526240.1| conserved hypothetical protein [Ricinus comm...    59   4e-07
ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vi...    58   9e-07
ref|XP_002267226.1| PREDICTED: F-box protein At5g07610 [Vitis vi...    57   2e-06
ref|XP_002315369.1| f-box family protein [Populus trichocarpa] g...    57   2e-06

>ref|XP_002526240.1| conserved hypothetical protein [Ricinus communis]
           gi|223534434|gb|EEF36137.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 393

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 10/91 (10%)
 Frame = +3

Query: 12  KILHSCNGLLLYNSSQFLNQSTGEVFVCNPLTKEYIKLPSYV-PTKGSEVVKNFGMNLVF 188
           KIL SCNGLLL ++   + Q     ++ NP TK+   LPS V     +     FG+NL F
Sbjct: 101 KILQSCNGLLLCSTLPKIGQKRN-YYISNPTTKQMFTLPSLVGDANAASPTTLFGLNLAF 159

Query: 189 DPSKSLHYKVVAV---------YEIEVTTSE 254
           DP KS +YKV+ V         Y+IE   SE
Sbjct: 160 DPLKSCNYKVICVRSTTNSIYQYQIETYQSE 190


>ref|XP_002269241.1| PREDICTED: F-box protein At5g07610 [Vitis vinifera]
           gi|297743579|emb|CBI36446.3| unnamed protein product
           [Vitis vinifera]
          Length = 374

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 33/72 (45%), Positives = 43/72 (59%)
 Frame = +3

Query: 12  KILHSCNGLLLYNSSQFLNQSTGEVFVCNPLTKEYIKLPSYVPTKGSEVVKNFGMNLVFD 191
           +IL SCNGL   +S  + N S  + ++ NP TK++  LP   P  G  V +  G+NL FD
Sbjct: 97  EILQSCNGLFCCSSVDY-NDSERKYYIYNPTTKQFTTLP---PLCGRSVRRVLGVNLAFD 152

Query: 192 PSKSLHYKVVAV 227
           PSKS  YKVV V
Sbjct: 153 PSKSHTYKVVCV 164


>ref|XP_002267226.1| PREDICTED: F-box protein At5g07610 [Vitis vinifera]
           gi|296090309|emb|CBI40128.3| unnamed protein product
           [Vitis vinifera]
          Length = 415

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/80 (40%), Positives = 46/80 (57%)
 Frame = +3

Query: 12  KILHSCNGLLLYNSSQFLNQSTGEVFVCNPLTKEYIKLPSYVPTKGSEVVKNFGMNLVFD 191
           K+L  CNGLL  ++ + L  S    ++CN  T+ +  LP    + G + V  FG+NL FD
Sbjct: 122 KVLQVCNGLLCCSTVRSLGTSRN-YYICNLATRRFSVLPPPCSSGGRDTV--FGINLAFD 178

Query: 192 PSKSLHYKVVAVYEIEVTTS 251
           PSKS +Y V+ V   EV+ S
Sbjct: 179 PSKSPYYSVICVRSCEVSIS 198


>ref|XP_002315369.1| f-box family protein [Populus trichocarpa]
           gi|222864409|gb|EEF01540.1| f-box family protein
           [Populus trichocarpa]
          Length = 406

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/71 (40%), Positives = 46/71 (64%)
 Frame = +3

Query: 15  ILHSCNGLLLYNSSQFLNQSTGEVFVCNPLTKEYIKLPSYVPTKGSEVVKNFGMNLVFDP 194
           I HSCNGLLL +S +  ++   + ++C P TK+Y +LP      G ++V  FG+N+ +DP
Sbjct: 128 IQHSCNGLLLCSSFR-CHEDDRKYYICKPTTKQYHQLPK----PGCKIV--FGINIAYDP 180

Query: 195 SKSLHYKVVAV 227
           + S HYK++ V
Sbjct: 181 TISPHYKIICV 191