BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028857
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]   225   3e-57
emb|CBI28334.3| unnamed protein product [Vitis vinifera]              173   1e-41
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containi...   159   2e-37

>emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  225 bits (574), Expect = 3e-57
 Identities = 108/171 (63%), Positives = 137/171 (80%)
 Frame = -1

Query: 518 PLTSISLYSQMLYKLEFFDGLQFSLPSVLKACGKTLSLNEGKQVHGQVLKTHFKNDLFVM 339
           P+ S+ LY++ML  L +  G++FS+PSVLKACGK L+ +EG+QVHGQVLKTH   D FV 
Sbjct: 88  PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147

Query: 338 NSLVRMYVQVGQIKLARLMFDKMTYRDLVSWNSMLHGYVKAGEIDFAVSLFEEMPEKDLV 159
           NS+VRMY+  G+I+LAR +FD+M  RD+VSWNSM+ GY+KAGEI+ A  LF+EMPE+DLV
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLV 207

Query: 158 SWNIMIDGYGKCGKCEQAEEIFERMSCRDVVSWTCMISGYVFNRRPKEGLD 6
           S N MIDGYGKCG+CE AE++FE MS +DVV+WT MIS YV NR P + LD
Sbjct: 208 SCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALD 258


>emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  173 bits (438), Expect = 1e-41
 Identities = 83/131 (63%), Positives = 106/131 (80%)
 Frame = -1

Query: 518 PLTSISLYSQMLYKLEFFDGLQFSLPSVLKACGKTLSLNEGKQVHGQVLKTHFKNDLFVM 339
           P+ S+ LY++ML  L +  G++FS+PSVLKACGK L+ +EG+QVHGQVLKTH   D FV 
Sbjct: 88  PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147

Query: 338 NSLVRMYVQVGQIKLARLMFDKMTYRDLVSWNSMLHGYVKAGEIDFAVSLFEEMPEKDLV 159
           NS+VRMY+  G+I+LAR +FD+M  RD+VSWNSM+ GY+KAGEI+ A  LF+EMPE+DLV
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLV 207

Query: 158 SWNIMIDGYGK 126
           S N MIDGYGK
Sbjct: 208 SCNAMIDGYGK 218


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  162 bits (409), Expect = 3e-38
 Identities = 75/139 (53%), Positives = 101/139 (72%)
 Frame = -1

Query: 452 FSLPSVLKACGKTLSLNEGKQVHGQVLKTHFKNDLFVMNSLVRMYVQVGQIKLARLMFDK 273
           F+LP VLK C +  +L EGKQ+HG VLK  F  D FV++SLV MY + G+I+L R +FD+
Sbjct: 115 FTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDR 174

Query: 272 MTYRDLVSWNSMLHGYVKAGEIDFAVSLFEEMPEKDLVSWNIMIDGYGKCGKCEQAEEIF 93
           M  +D+VSWNS++ GY + GEI+ A+ +FEEMPEKD  SW I+IDG  K GK E A ++F
Sbjct: 175 MEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVF 234

Query: 92  ERMSCRDVVSWTCMISGYV 36
           +RM  R+ VSW  MI+GY+
Sbjct: 235 DRMPIRNSVSWNAMINGYM 253


>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  162 bits (409), Expect = 3e-38
 Identities = 71/139 (51%), Positives = 99/139 (71%)
 Frame = -1

Query: 452 FSLPSVLKACGKTLSLNEGKQVHGQVLKTHFKNDLFVMNSLVRMYVQVGQIKLARLMFDK 273
           F+LP V+K C +   + EGKQ+HG  LK  F +D+FV  SLV MY + G+I  AR +FD 
Sbjct: 113 FTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDG 172

Query: 272 MTYRDLVSWNSMLHGYVKAGEIDFAVSLFEEMPEKDLVSWNIMIDGYGKCGKCEQAEEIF 93
           M  +D+V WNS++ GY + GEID A+ LFEEMPE+D  SW +++DG  KCGK E A ++F
Sbjct: 173 MIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLF 232

Query: 92  ERMSCRDVVSWTCMISGYV 36
           ++M CR++VSW  MI+GY+
Sbjct: 233 DQMPCRNLVSWNAMINGYM 251


>ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  159 bits (403), Expect = 2e-37
 Identities = 78/145 (53%), Positives = 107/145 (73%)
 Frame = -1

Query: 518 PLTSISLYSQMLYKLEFFDGLQFSLPSVLKACGKTLSLNEGKQVHGQVLKTHFKNDLFVM 339
           P+ S+ LY++ML  L +  G++FS+PSVLKACGK L+ +EG+QVHGQVLKTH   D FV 
Sbjct: 88  PVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVG 147

Query: 338 NSLVRMYVQVGQIKLARLMFDKMTYRDLVSWNSMLHGYVKAGEIDFAVSLFEEMPEKDLV 159
           NS+VRMY+  G+I+LAR +FD+M  RD+VSWNSM+ GY+KAGEI+ A  +FE M +KD+V
Sbjct: 148 NSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVV 207

Query: 158 SWNIMIDGYGKCGKCEQAEEIFERM 84
           +W  MI  Y +     +A ++F  M
Sbjct: 208 TWTSMISAYVQNRCPMKALDLFREM 232