BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028854
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24015.3| unnamed protein product [Vitis vinifera]              194   5e-48
ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containi...   194   5e-48
ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containi...   170   1e-40
ref|XP_002328762.1| predicted protein [Populus trichocarpa] gi|2...   158   4e-37
ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containi...   154   5e-36

>emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  194 bits (494), Expect = 5e-48
 Identities = 88/110 (80%), Positives = 103/110 (93%)
 Frame = -2

Query: 332 FIAGGRGHPQATEIYAKVDEMLERMKCAGYVPNTDGVLHDVEEEDRENPLHYHSEKLAIA 153
           FIAGGR HPQA EIYAK+DE+LE ++  GYVP+TDGVLHD++EE++ENPL+YHSEKLAIA
Sbjct: 449 FIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIA 508

Query: 152 FGLLKTKPGATIRISKNLRVCRDCHQASKLISKIFYREIIVRDRNRFHHF 3
           FGLLKTKPG T+RISKNLR+CRDCHQASKLISK++ REII+RDRNRFHHF
Sbjct: 509 FGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 558


>ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  194 bits (494), Expect = 5e-48
 Identities = 88/110 (80%), Positives = 103/110 (93%)
 Frame = -2

Query: 332 FIAGGRGHPQATEIYAKVDEMLERMKCAGYVPNTDGVLHDVEEEDRENPLHYHSEKLAIA 153
           FIAGGR HPQA EIYAK+DE+LE ++  GYVP+TDGVLHD++EE++ENPL+YHSEKLAIA
Sbjct: 504 FIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIA 563

Query: 152 FGLLKTKPGATIRISKNLRVCRDCHQASKLISKIFYREIIVRDRNRFHHF 3
           FGLLKTKPG T+RISKNLR+CRDCHQASKLISK++ REII+RDRNRFHHF
Sbjct: 564 FGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 613


>ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  170 bits (431), Expect = 1e-40
 Identities = 77/110 (70%), Positives = 96/110 (87%)
 Frame = -2

Query: 332 FIAGGRGHPQATEIYAKVDEMLERMKCAGYVPNTDGVLHDVEEEDRENPLHYHSEKLAIA 153
           F+AGGR HP A  IYAK+ EMLE ++  G+VP+TDGVLHD+ EE+RENPL YHSEKLAIA
Sbjct: 487 FVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIA 546

Query: 152 FGLLKTKPGATIRISKNLRVCRDCHQASKLISKIFYREIIVRDRNRFHHF 3
           +GLLKTK G T+R++KNLRVC+DCHQASK+ISK++  +II+RDR+RFHHF
Sbjct: 547 YGLLKTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHF 596


>ref|XP_002328762.1| predicted protein [Populus trichocarpa] gi|222839060|gb|EEE77411.1|
           predicted protein [Populus trichocarpa]
          Length = 632

 Score =  158 bits (400), Expect = 4e-37
 Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 3/113 (2%)
 Frame = -2

Query: 332 FIAGGRGHPQATEIYAKVDEMLERMKCAGYVPNTDGVLHDV---EEEDRENPLHYHSEKL 162
           FIAG R HPQA E++AKV EMLE +K  GYV +T+GVLH     EEED ENPL+YHSEKL
Sbjct: 509 FIAGERNHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKL 568

Query: 161 AIAFGLLKTKPGATIRISKNLRVCRDCHQASKLISKIFYREIIVRDRNRFHHF 3
           AIAFGL +TKPG T+RI KNLR+C DCH A KLIS +F REIIVRDR RFH F
Sbjct: 569 AIAFGLSRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRF 621


>ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  154 bits (390), Expect = 5e-36
 Identities = 69/110 (62%), Positives = 89/110 (80%)
 Frame = -2

Query: 332 FIAGGRGHPQATEIYAKVDEMLERMKCAGYVPNTDGVLHDVEEEDRENPLHYHSEKLAIA 153
           F  G   H Q  EI+A V +M+ +++  GY+P+T  VLHD+ EE++E PL YHSEKLAIA
Sbjct: 479 FQCGSLCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIA 538

Query: 152 FGLLKTKPGATIRISKNLRVCRDCHQASKLISKIFYREIIVRDRNRFHHF 3
           FGLL+T+PG T+RI+KNLRVCRDCH+A+K IS++F REI+VRDRNRFHHF
Sbjct: 539 FGLLRTRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHF 588