BLASTX nr result
ID: Coptis24_contig00028841
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028841
(557 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containi... 105 3e-35
emb|CBI28142.3| unnamed protein product [Vitis vinifera] 105 3e-35
ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containi... 152 4e-35
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi... 97 2e-34
ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containi... 97 4e-34
>ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 105 bits (262), Expect(2) = 3e-35
Identities = 48/100 (48%), Positives = 71/100 (71%)
Frame = -1
Query: 557 NDTTFIAILTACTHAGLVDEGLNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKF 378
+D TFI +L+AC+H GLV+EG F M +Y++EP+LEHY C++DLL RAG+L+EAE+
Sbjct: 465 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 524
Query: 377 IEERIGGVGKGDANVWGALLGACRTYGNVKVGNEFGESLL 258
IE+ + ++GALL ACRT+GNV++G + L+
Sbjct: 525 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLV 564
Score = 68.6 bits (166), Expect(2) = 3e-35
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = -3
Query: 282 QRVWRKLADLGVADCGTYINLYNMYKESGWEMEANQARRSIREMGMKKKPGCSLVEVDGM 103
+RV ++L + D + L N+Y + + + RR ++++G+KK PGCS VEV+G+
Sbjct: 557 ERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGI 616
Query: 102 VDEFGAGDLSHPEAREMCEVLHSL 31
V EF GD SHPE RE+ +L S+
Sbjct: 617 VHEFLVGDASHPEMREIYSMLDSI 640
>emb|CBI28142.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 105 bits (262), Expect(2) = 3e-35
Identities = 48/100 (48%), Positives = 71/100 (71%)
Frame = -1
Query: 557 NDTTFIAILTACTHAGLVDEGLNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKF 378
+D TFI +L+AC+H GLV+EG F M +Y++EP+LEHY C++DLL RAG+L+EAE+
Sbjct: 374 DDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEEL 433
Query: 377 IEERIGGVGKGDANVWGALLGACRTYGNVKVGNEFGESLL 258
IE+ + ++GALL ACRT+GNV++G + L+
Sbjct: 434 IEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLV 473
Score = 68.6 bits (166), Expect(2) = 3e-35
Identities = 33/84 (39%), Positives = 52/84 (61%)
Frame = -3
Query: 282 QRVWRKLADLGVADCGTYINLYNMYKESGWEMEANQARRSIREMGMKKKPGCSLVEVDGM 103
+RV ++L + D + L N+Y + + + RR ++++G+KK PGCS VEV+G+
Sbjct: 466 ERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGI 525
Query: 102 VDEFGAGDLSHPEAREMCEVLHSL 31
V EF GD SHPE RE+ +L S+
Sbjct: 526 VHEFLVGDASHPEMREIYSMLDSI 549
>ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 152 bits (383), Expect = 4e-35
Identities = 68/98 (69%), Positives = 86/98 (87%)
Frame = -1
Query: 554 DTTFIAILTACTHAGLVDEGLNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKFI 375
+TTF+A+LTACTHA LV EGL LF++M + Y +EP+LEHYAC+VDL+ARAG L EAEKFI
Sbjct: 347 ETTFVAVLTACTHARLVKEGLKLFEQMSSNYGVEPQLEHYACLVDLMARAGMLAEAEKFI 406
Query: 374 EERIGGVGKGDANVWGALLGACRTYGNVKVGNEFGESL 261
EE++GG+G+GDANVWGA+LGACRTYGN++VGN + L
Sbjct: 407 EEKMGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKL 444
Score = 125 bits (315), Expect = 3e-27
Identities = 59/112 (52%), Positives = 79/112 (70%), Gaps = 11/112 (9%)
Frame = -3
Query: 333 LGGFTRCLSNLW-----------KCQSRQRVWRKLADLGVADCGTYINLYNMYKESGWEM 187
+GG R +N+W + RVW+KLAD+GVADCGT++ YN+Y+E+GW+M
Sbjct: 410 MGGLGRGDANVWGAMLGACRTYGNIEVGNRVWKKLADMGVADCGTHVLSYNLYREAGWDM 469
Query: 186 EANQARRSIREMGMKKKPGCSLVEVDGMVDEFGAGDLSHPEAREMCEVLHSL 31
EA + RR I E GMKKKPGCS++EVDG V+EF AGDLSH +A ++C+ L SL
Sbjct: 470 EAKRVRRLISEAGMKKKPGCSIIEVDGTVEEFLAGDLSHSQAPQICKTLDSL 521
>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 96.7 bits (239), Expect(2) = 2e-34
Identities = 45/99 (45%), Positives = 67/99 (67%)
Frame = -1
Query: 557 NDTTFIAILTACTHAGLVDEGLNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKF 378
+D TFI +L+AC+H GLV+EG F+ M ++++EP++EHY CV+DLL RAG L+EAE+
Sbjct: 576 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 635
Query: 377 IEERIGGVGKGDANVWGALLGACRTYGNVKVGNEFGESL 261
I+E + ++GALL ACR + NV +G + L
Sbjct: 636 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674
Score = 74.3 bits (181), Expect(2) = 2e-34
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 282 QRVWRKLADLGVADCGTYINLYNMYKE-SGWEMEANQARRSIREMGMKKKPGCSLVEVDG 106
+R+ +KL ++ D + L N+Y WE +A + RR ++E+G+KK PGCSL+EVDG
Sbjct: 668 ERLAKKLENIESCDSSIHTLLANIYASVDRWE-DAKKVRRKMKELGVKKMPGCSLIEVDG 726
Query: 105 MVDEFGAGDLSHPEAREMCEVLH 37
+V EF GD SHPE E+C +L+
Sbjct: 727 IVHEFLVGDPSHPEMMEICSMLN 749
>ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 96.7 bits (239), Expect(2) = 4e-34
Identities = 45/99 (45%), Positives = 67/99 (67%)
Frame = -1
Query: 557 NDTTFIAILTACTHAGLVDEGLNLFDKMGTIYKLEPRLEHYACVVDLLARAGRLEEAEKF 378
+D TFI +L+AC+H GLV+EG F+ M ++++EP++EHY CV+DLL RAG L+EAE+
Sbjct: 530 DDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEEL 589
Query: 377 IEERIGGVGKGDANVWGALLGACRTYGNVKVGNEFGESL 261
I+E + ++GALL ACR + NV +G + L
Sbjct: 590 IQEIPIENCEIVVPLYGALLSACRIHNNVDMGERLAKKL 628
Score = 73.6 bits (179), Expect(2) = 4e-34
Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = -3
Query: 282 QRVWRKLADLGVADCGTYINLYNMYKE-SGWEMEANQARRSIREMGMKKKPGCSLVEVDG 106
+R+ +KL ++ D + L N+Y WE +A + RR ++E+G+KK PGCSL+EVDG
Sbjct: 622 ERLAKKLENIESCDSSIHTLLANIYASVDRWE-DAKKVRRKMKELGVKKMPGCSLIEVDG 680
Query: 105 MVDEFGAGDLSHPEAREMCEVLH 37
+V EF GD SHPE E+C +L+
Sbjct: 681 IVHEFLVGDPSHPEMIEICSMLN 703