BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028749
         (1131 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17913.3| unnamed protein product [Vitis vinifera]              528   e-147
ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]     527   e-147
ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana] gi|75174554...   509   e-142
dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]        508   e-141
ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]    507   e-141

>emb|CBI17913.3| unnamed protein product [Vitis vinifera]
          Length = 1163

 Score =  528 bits (1359), Expect = e-147
 Identities = 261/333 (78%), Positives = 292/333 (87%)
 Frame = +2

Query: 71   FSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGLKE 250
            FSVLCS++ W+                LD +C +    F++IRLILP+LDRERGSYGLKE
Sbjct: 7    FSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCIN-GHQFSAIRLILPNLDRERGSYGLKE 65

Query: 251  SVLATCLIDALGISRESEDAVRLINWRKGGAKTGVNVGNFALVASEVLQRRQSLSSGGLT 430
            SVLATCLIDALG+SRESEDA+RLINWRKGGAKTG N GNFA+VA+EVLQRRQ ++SGGLT
Sbjct: 66   SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSGGLT 125

Query: 431  ILELNVLLDRLSATENRAEKTGVLAELIKKTNAQEMKWIVMIILKDLKLGTSEKSIFHEF 610
            I ELN LLD L+++ENR EKT VL+ LIKKTNAQEMKWIVMIILKDLKLG SEKSIFHEF
Sbjct: 126  IKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKSIFHEF 185

Query: 611  HPDAEDLFNVTCDLKLVCEKLRDRSKRHKRQDIEIGKAVRPQLALRISDAAAAWKKLHGK 790
            HPDAEDLFNVTCDLKLVCEKL+DRS+RHKRQDIE+GKAVRPQLA+R++DA AAWKKLHGK
Sbjct: 186  HPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWKKLHGK 245

Query: 791  EVVVECKFDGDRIQIHKSGAEIHFFSRNFLDHPEYEHAMSNIIKENILVDRCILDGEMLV 970
            EVVVECKFDGDRIQIHK+G EIHFFSRNFLDHPEY++AMSNI+ +N+LVDRCILDGEMLV
Sbjct: 246  EVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILDGEMLV 305

Query: 971  WDTSTNRFAEFGSNQEIAKDAKQGFDSDRQVHS 1069
            WD S NRFAEFGSNQEIAK AK+G DSDRQV S
Sbjct: 306  WDISLNRFAEFGSNQEIAKAAKEGLDSDRQVLS 338


>ref|XP_002263967.1| PREDICTED: DNA ligase 4-like [Vitis vinifera]
          Length = 1162

 Score =  527 bits (1358), Expect = e-147
 Identities = 261/338 (77%), Positives = 294/338 (86%)
 Frame = +2

Query: 71   FSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGLKE 250
            FSVLCS++ W+                LD +C +    F++IRLILP+LDRERGSYGLKE
Sbjct: 7    FSVLCSLFTWIQRSRTSAKKRSKFRIFLDTFCIN-GHQFSAIRLILPNLDRERGSYGLKE 65

Query: 251  SVLATCLIDALGISRESEDAVRLINWRKGGAKTGVNVGNFALVASEVLQRRQSLSSGGLT 430
            SVLATCLIDALG+SRESEDA+RLINWRKGGAKTG N GNFA+VA+EVLQRRQ ++SGGLT
Sbjct: 66   SVLATCLIDALGMSRESEDALRLINWRKGGAKTGANAGNFAMVAAEVLQRRQGMTSGGLT 125

Query: 431  ILELNVLLDRLSATENRAEKTGVLAELIKKTNAQEMKWIVMIILKDLKLGTSEKSIFHEF 610
            I ELN LLD L+++ENR EKT VL+ LIKKTNAQEMKWIVMIILKDLKLG SEKSIFHEF
Sbjct: 126  IKELNDLLDCLASSENRTEKTSVLSTLIKKTNAQEMKWIVMIILKDLKLGISEKSIFHEF 185

Query: 611  HPDAEDLFNVTCDLKLVCEKLRDRSKRHKRQDIEIGKAVRPQLALRISDAAAAWKKLHGK 790
            HPDAEDLFNVTCDLKLVCEKL+DRS+RHKRQDIE+GKAVRPQLA+R++DA AAWKKLHGK
Sbjct: 186  HPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVADATAAWKKLHGK 245

Query: 791  EVVVECKFDGDRIQIHKSGAEIHFFSRNFLDHPEYEHAMSNIIKENILVDRCILDGEMLV 970
            EVVVECKFDGDRIQIHK+G EIHFFSRNFLDHPEY++AMSNI+ +N+LVDRCILDGEMLV
Sbjct: 246  EVVVECKFDGDRIQIHKNGEEIHFFSRNFLDHPEYKYAMSNIVAQNLLVDRCILDGEMLV 305

Query: 971  WDTSTNRFAEFGSNQEIAKDAKQGFDSDRQVHSINFFI 1084
            WD S NRFAEFGSNQEIAK AK+G DSDRQ+  + F I
Sbjct: 306  WDISLNRFAEFGSNQEIAKAAKEGLDSDRQLCYVAFDI 343


>ref|NP_568851.2| DNA ligase 4 [Arabidopsis thaliana]
            gi|75174554|sp|Q9LL84.1|DNLI4_ARATH RecName: Full=DNA
            ligase 4; AltName: Full=DNA ligase IV; AltName:
            Full=Polydeoxyribonucleotide synthase [ATP] 4
            gi|9651815|gb|AAF91284.1|AF233527_1 DNA ligase IV
            [Arabidopsis thaliana] gi|332009474|gb|AED96857.1| DNA
            ligase 4 [Arabidopsis thaliana]
          Length = 1219

 Score =  509 bits (1310), Expect = e-142
 Identities = 251/339 (74%), Positives = 289/339 (85%), Gaps = 1/339 (0%)
 Frame = +2

Query: 65   VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 244
            + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5    IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 245  KESVLATCLIDALGISRESEDAVRLINWRKGG-AKTGVNVGNFALVASEVLQRRQSLSSG 421
            KESVLATCLIDALGISR++ DAVRL+NWRKGG AK G N GNF+L+A+EVLQRRQ ++SG
Sbjct: 64   KESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASG 123

Query: 422  GLTILELNVLLDRLSATENRAEKTGVLAELIKKTNAQEMKWIVMIILKDLKLGTSEKSIF 601
            GLTI ELN LLDRL+++ENRAEKT VL+ LI+KTNAQEMKW++ IILKDLKLG SEKSIF
Sbjct: 124  GLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKSIF 183

Query: 602  HEFHPDAEDLFNVTCDLKLVCEKLRDRSKRHKRQDIEIGKAVRPQLALRISDAAAAWKKL 781
             EFHPDAEDLFNVTCDLKLVCEKLRDR +RHKRQDIE+GKAVRPQLA+RI D  AAWKKL
Sbjct: 184  QEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWKKL 243

Query: 782  HGKEVVVECKFDGDRIQIHKSGAEIHFFSRNFLDHPEYEHAMSNIIKENILVDRCILDGE 961
            HGK+VV ECKFDGDRIQIHK+G +IH+FSRNFLDH EY HAMS++I +NILVD+CILDGE
Sbjct: 244  HGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILDGE 303

Query: 962  MLVWDTSTNRFAEFGSNQEIAKDAKQGFDSDRQVHSINF 1078
            MLVWDTS NRFAEFGSNQEIAK A++G DS +Q+  + F
Sbjct: 304  MLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQLCYVAF 342


>dbj|BAA97366.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1184

 Score =  508 bits (1307), Expect = e-141
 Identities = 250/333 (75%), Positives = 286/333 (85%), Gaps = 1/333 (0%)
 Frame = +2

Query: 65   VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 244
            + FSVL S++NW+                LD YCK PSDYF ++RLI+PSLDRERGSYGL
Sbjct: 5    IKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCK-PSDYFVAVRLIIPSLDRERGSYGL 63

Query: 245  KESVLATCLIDALGISRESEDAVRLINWRKGG-AKTGVNVGNFALVASEVLQRRQSLSSG 421
            KESVLATCLIDALGISR++ DAVRL+NWRKGG AK G N GNF+L+A+EVLQRRQ ++SG
Sbjct: 64   KESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASG 123

Query: 422  GLTILELNVLLDRLSATENRAEKTGVLAELIKKTNAQEMKWIVMIILKDLKLGTSEKSIF 601
            GLTI ELN LLDRL+++ENRAEKT VL+ LI+KTNAQEMKW++ IILKDLKLG SEKSIF
Sbjct: 124  GLTIKELNDLLDRLASSENRAEKTLVLSTLIQKTNAQEMKWVIRIILKDLKLGMSEKSIF 183

Query: 602  HEFHPDAEDLFNVTCDLKLVCEKLRDRSKRHKRQDIEIGKAVRPQLALRISDAAAAWKKL 781
             EFHPDAEDLFNVTCDLKLVCEKLRDR +RHKRQDIE+GKAVRPQLA+RI D  AAWKKL
Sbjct: 184  QEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRIGDVNAAWKKL 243

Query: 782  HGKEVVVECKFDGDRIQIHKSGAEIHFFSRNFLDHPEYEHAMSNIIKENILVDRCILDGE 961
            HGK+VV ECKFDGDRIQIHK+G +IH+FSRNFLDH EY HAMS++I +NILVD+CILDGE
Sbjct: 244  HGKDVVAECKFDGDRIQIHKNGTDIHYFSRNFLDHSEYAHAMSDLIVQNILVDKCILDGE 303

Query: 962  MLVWDTSTNRFAEFGSNQEIAKDAKQGFDSDRQ 1060
            MLVWDTS NRFAEFGSNQEIAK A++G DS +Q
Sbjct: 304  MLVWDTSLNRFAEFGSNQEIAKAAREGLDSHKQ 336


>ref|XP_004149513.1| PREDICTED: DNA ligase 4-like [Cucumis sativus]
          Length = 1214

 Score =  507 bits (1305), Expect = e-141
 Identities = 251/338 (74%), Positives = 286/338 (84%)
 Frame = +2

Query: 65   VPFSVLCSMYNWMAXXXXXXXXXXXXXXXLDNYCKSPSDYFNSIRLILPSLDRERGSYGL 244
            + F+VL S+++W+                LD +C SPS YF++IRLILPSLDRERG+YGL
Sbjct: 5    IKFAVLSSLFDWIQRSKSSAKKRSKFRKFLDTFC-SPSHYFSAIRLILPSLDRERGTYGL 63

Query: 245  KESVLATCLIDALGISRESEDAVRLINWRKGGAKTGVNVGNFALVASEVLQRRQSLSSGG 424
            KESVLATCLIDALG+SR+SEDA+RLINWRKGGAKTG N GNFALVA+EVLQRRQ ++ GG
Sbjct: 64   KESVLATCLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVAAEVLQRRQGMTPGG 123

Query: 425  LTILELNVLLDRLSATENRAEKTGVLAELIKKTNAQEMKWIVMIILKDLKLGTSEKSIFH 604
            LTI ELN LLDRL++ ENRAEKT VL+ LI+KTNAQEMKWIVMI L DLKLG SEKSIFH
Sbjct: 124  LTINELNDLLDRLASGENRAEKTAVLSTLIQKTNAQEMKWIVMIFLVDLKLGVSEKSIFH 183

Query: 605  EFHPDAEDLFNVTCDLKLVCEKLRDRSKRHKRQDIEIGKAVRPQLALRISDAAAAWKKLH 784
            EFHPDAEDLFNVTCDLKLVCEKLRDR +RHKRQDIE+GKAVRPQLA R+S+A AAWKKLH
Sbjct: 184  EFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAAWKKLH 243

Query: 785  GKEVVVECKFDGDRIQIHKSGAEIHFFSRNFLDHPEYEHAMSNIIKENILVDRCILDGEM 964
            GKEVV ECKFDGDRIQIHK+G E+H+FSRNFLDH EY H MS++I +N+   RCILDGEM
Sbjct: 244  GKEVVAECKFDGDRIQIHKNGTEVHYFSRNFLDHSEYGHGMSDVIVQNVRSARCILDGEM 303

Query: 965  LVWDTSTNRFAEFGSNQEIAKDAKQGFDSDRQVHSINF 1078
            LVWD S NRFAEFGSNQEIA+ AK GFDS+RQ+  + F
Sbjct: 304  LVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAF 341