BLASTX nr result

ID: Coptis24_contig00028738 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028738
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004165243.1| PREDICTED: LOW QUALITY PROTEIN: ABC transpor...    68   9e-10
ref|XP_004151184.1| PREDICTED: ABC transporter G family member 3...    68   9e-10
gb|ACU82514.1| pleiotropic drug resistance protein [Cucumis sati...    68   9e-10
ref|XP_002303308.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
gb|ACJ86311.1| unknown [Medicago truncatula]                           64   2e-08

>ref|XP_004165243.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member
           36-like [Cucumis sativus]
          Length = 1475

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
 Frame = -2

Query: 162 RASQRMSTSISRNMSKTNWGMEDVFVS--TSRKSIAINEDEEALVWAALEKLPTYD 1
           R S+  S SISR+ S+ +W MEDVF +   SR+S  ++EDEEAL WAA+EKLPTYD
Sbjct: 4   RTSRNFSRSISRSFSRASWSMEDVFANGNPSRRSSRVDEDEEALRWAAIEKLPTYD 59


>ref|XP_004151184.1| PREDICTED: ABC transporter G family member 36-like [Cucumis
           sativus]
          Length = 1475

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
 Frame = -2

Query: 162 RASQRMSTSISRNMSKTNWGMEDVFVS--TSRKSIAINEDEEALVWAALEKLPTYD 1
           R S+  S SISR+ S+ +W MEDVF +   SR+S  ++EDEEAL WAA+EKLPTYD
Sbjct: 4   RTSRNFSRSISRSFSRASWSMEDVFANGNPSRRSSRVDEDEEALRWAAIEKLPTYD 59


>gb|ACU82514.1| pleiotropic drug resistance protein [Cucumis sativus]
          Length = 1475

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 33/56 (58%), Positives = 42/56 (75%), Gaps = 2/56 (3%)
 Frame = -2

Query: 162 RASQRMSTSISRNMSKTNWGMEDVFVS--TSRKSIAINEDEEALVWAALEKLPTYD 1
           R S+  S SISR+ S+ +W MEDVF +   SR+S  ++EDEEAL WAA+EKLPTYD
Sbjct: 4   RTSRNFSRSISRSFSRASWSMEDVFANGNPSRRSSRVDEDEEALRWAAIEKLPTYD 59


>ref|XP_002303308.1| predicted protein [Populus trichocarpa] gi|222840740|gb|EEE78287.1|
           predicted protein [Populus trichocarpa]
          Length = 1448

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
 Frame = -2

Query: 198 MDGLERVWSSGMRASQR-MSTSISRNMSKTNWGMEDVFVS--TSRKSIAINEDEEALVWA 28
           MDG E+  +SG R+S   +S SISR++ +  W M+DVF +   SR++  ++ DEEAL WA
Sbjct: 1   MDGEEKARASGRRSSHSSLSRSISRSLIRAGWNMDDVFSAGRDSRRTSLVDGDEEALKWA 60

Query: 27  ALEKLPTYD 1
           A+EKLPTY+
Sbjct: 61  AIEKLPTYN 69


>gb|ACJ86311.1| unknown [Medicago truncatula]
          Length = 128

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 30/51 (58%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
 Frame = -2

Query: 147 MSTSISRNMSKTNWGMEDVFVST--SRKSIAINEDEEALVWAALEKLPTYD 1
           +S SISR++S+++W ME+VF S   SR++  ++EDEEAL WAA+EKLPTYD
Sbjct: 5   LSRSISRSLSRSSWKMEEVFASGRYSRRTSQVDEDEEALKWAAIEKLPTYD 55


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