BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028688
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   107   1e-21
ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17
ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14
ref|XP_002511922.1| pentatricopeptide repeat-containing protein,...    80   1e-13
ref|XP_002878387.1| pentatricopeptide repeat-containing protein ...    75   7e-12

>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  107 bits (266), Expect = 1e-21
 Identities = 52/106 (49%), Positives = 74/106 (69%)
 Frame = -1

Query: 318 FPPNDLTGFMFFDGLARRGKFVLPVKWEEVIGLVTKFGEHGVFPDALVLHKLITRLGRSG 139
           FPPN  TG + F  L++R K    V  EE++GLV+KF EH VFP+++ L +LI+RL RSG
Sbjct: 225 FPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFPNSIWLTQLISRLCRSG 284

Query: 138 NVEHAWDLVHVLMKMSAPLEASCFNALLTGLGLESQFEKMNLLVSE 1
             + AWD++H LMK+   +EA+  NALLT LG   +F++MN L++E
Sbjct: 285 RTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAE 330


>ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
           gi|449475521|ref|XP_004154479.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/110 (44%), Positives = 71/110 (64%)
 Frame = -1

Query: 336 LVKGSTFPPNDLTGFMFFDGLARRGKFVLPVKWEEVIGLVTKFGEHGVFPDALVLHKLIT 157
           L+  S F PND T  + F+ L +       VK +E+ GLV+KFG+H +FPD + L +LI+
Sbjct: 66  LLPESEFRPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLIS 125

Query: 156 RLGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGLGLESQFEKMNLLV 7
           +L RSGN   AW+++  LM ++   +A+  NALLTGLG   +F KMNLL+
Sbjct: 126 KLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLM 175


>ref|XP_002320827.1| predicted protein [Populus trichocarpa] gi|222861600|gb|EEE99142.1|
           predicted protein [Populus trichocarpa]
          Length = 775

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/104 (40%), Positives = 62/104 (59%)
 Frame = -1

Query: 312 PNDLTGFMFFDGLARRGKFVLPVKWEEVIGLVTKFGEHGVFPDALVLHKLITRLGRSGNV 133
           PND TG + F  L +R +    +  +E++ LV KFGEHGV   +  + +LITRL R+   
Sbjct: 227 PNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKT 286

Query: 132 EHAWDLVHVLMKMSAPLEASCFNALLTGLGLESQFEKMNLLVSE 1
              WDL   ++K+ A LE++  N+LLTGL  E  F +MN L+ +
Sbjct: 287 NRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEK 330


>ref|XP_002511922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549102|gb|EEF50591.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 346

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
 Frame = -1

Query: 336 LVKGSTFP--PNDLTGFMFFDGLARRGKFVLPVKWEEVIGLVTKFGEHGVFPDALVLHKL 163
           L  GS F   P+D+TG + F  L +R K V P   EE++ +V K G+  VFP+++ L + 
Sbjct: 224 LQPGSEFDLRPDDVTGDIIFTWLMKREKLVSP---EEIVEVVLKLGKFDVFPNSIRLTQT 280

Query: 162 ITRLGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGLGLESQFEKMN 16
           I +L R+GN   A+DL+  LM + A ++A+  NALLTGLG +  F+KMN
Sbjct: 281 IGQLCRTGNTSKAYDLLIELMTLGAAIKAAPCNALLTGLGRDGDFDKMN 329


>ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324225|gb|EFH54646.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 766

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 43/110 (39%), Positives = 65/110 (59%)
 Frame = -1

Query: 336 LVKGSTFPPNDLTGFMFFDGLARRGKFVLPVKWEEVIGLVTKFGEHGVFPDALVLHKLIT 157
           L K S FPPN +T  +    + + G+ +     E++IGL+++F  HGV P+++ L + I+
Sbjct: 212 LQKESVFPPNRITADIVLHEVWK-GRLLTE---EKIIGLISRFSSHGVSPNSVWLTRFIS 267

Query: 156 RLGRSGNVEHAWDLVHVLMKMSAPLEASCFNALLTGLGLESQFEKMNLLV 7
            L ++     AWD++  LMK  APLEA  FNALL+ LG      +MN LV
Sbjct: 268 SLCKNARTNAAWDILSDLMKNKAPLEAPPFNALLSCLGRNMNIGRMNALV 317