BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028680
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   171   4e-41
emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]     163   2e-38
dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]            157   8e-37
ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arab...   156   2e-36
ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|2...   154   7e-36

>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  171 bits (434), Expect = 4e-41
 Identities = 92/158 (58%), Positives = 108/158 (68%)
 Frame = +1

Query: 1    GAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXXVRFILAVVRGEIIVS 180
            G IKK+  PEQILEEFF LRLEFY+                    VRFIL VVRGEIIVS
Sbjct: 995  GTIKKYETPEQILEEFFHLRLEFYEKRKRVLLDNLELELLKLENKVRFILGVVRGEIIVS 1054

Query: 181  NRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDSDYDYL 360
            NRKR DL  EL QKGFTPFPKK K+VE A+AGA  D EE E+N+      G R +DY+YL
Sbjct: 1055 NRKRADLFHELHQKGFTPFPKKSKSVEIAVAGATDDTEEAEENTDAVSKGGVRATDYEYL 1114

Query: 361  LSMSIGTLTLEKVQELIASKDRLVEDIEEYKKVTSKSL 474
            LSM+IGTLTLEKVQEL A +D+L + +++ KK T K+L
Sbjct: 1115 LSMAIGTLTLEKVQELCADRDKLNKGVDDLKKATPKAL 1152


>emb|CAJ44361.1| putative DNA topoisomerase II [Malus x domestica]
          Length = 1467

 Score =  163 bits (412), Expect = 2e-38
 Identities = 86/158 (54%), Positives = 107/158 (67%)
 Frame = +1

Query: 1    GAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXXVRFILAVVRGEIIVS 180
            G IKK+  PEQILE+FF LRLEFY+                    VRFIL VV GEIIVS
Sbjct: 960  GVIKKYDTPEQILEDFFHLRLEFYEKRKKVLLEDLELELLKLENKVRFILGVVNGEIIVS 1019

Query: 181  NRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDSDYDYL 360
            NRKR DL LELQQKGFTPFPKK K +E  +AGA  + E+ E+NS  A   G R SDY+YL
Sbjct: 1020 NRKRADLFLELQQKGFTPFPKKTKALEPEVAGATENTEDAEENSEAAIEKGARISDYEYL 1079

Query: 361  LSMSIGTLTLEKVQELIASKDRLVEDIEEYKKVTSKSL 474
            +SM+IGTLT+E+VQ L+A +D+   +++E +K T +SL
Sbjct: 1080 ISMAIGTLTIERVQALLADRDKANAEVDELRKSTPRSL 1117


>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  157 bits (397), Expect = 8e-37
 Identities = 82/158 (51%), Positives = 104/158 (65%)
 Frame = +1

Query: 1    GAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXXVRFILAVVRGEIIVS 180
            G IKK+  PEQILEEFF +RLE Y+                     RFI  VV G IIVS
Sbjct: 1003 GVIKKYDTPEQILEEFFYIRLELYEKRKKVLLDILEHDMLKCDNKYRFIRCVVEGSIIVS 1062

Query: 181  NRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDSDYDYL 360
            NRKR D+  EL++KGFTPFPKK    E A+AGA  D EE E+NS +  + G   SDYDYL
Sbjct: 1063 NRKRTDVFRELKEKGFTPFPKKKNRAEVAIAGATDDGEETEENSEVPIAPGVSSSDYDYL 1122

Query: 361  LSMSIGTLTLEKVQELIASKDRLVEDIEEYKKVTSKSL 474
            LS++IGTLT EK+QEL A +D+L++++EE K+ T++SL
Sbjct: 1123 LSLAIGTLTTEKMQELRAERDKLMQEVEELKQSTARSL 1160


>ref|XP_002883470.1| hypothetical protein ARALYDRAFT_898932 [Arabidopsis lyrata subsp.
            lyrata] gi|297329310|gb|EFH59729.1| hypothetical protein
            ARALYDRAFT_898932 [Arabidopsis lyrata subsp. lyrata]
          Length = 1432

 Score =  156 bits (394), Expect = 2e-36
 Identities = 82/161 (50%), Positives = 112/161 (69%), Gaps = 3/161 (1%)
 Frame = +1

Query: 1    GAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXXVRFILAVVRGEIIVS 180
            G IKK+  PEQILEEFF LRLE+Y+                    VRFIL V+ GEIIV+
Sbjct: 995  GVIKKYATPEQILEEFFELRLEYYEKRKETMLKNLEIELLKLENKVRFILGVLSGEIIVN 1054

Query: 181  NRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVI---AGSTGGRDSDY 351
            NRK+ D++ +L+Q+GFTPFPKK ++VEAA+AGAV DA E  +  ++   + ST    S+Y
Sbjct: 1055 NRKKADIVEDLRQRGFTPFPKKAESVEAAVAGAVDDAAEESEEILVDPESSSTYIPGSEY 1114

Query: 352  DYLLSMSIGTLTLEKVQELIASKDRLVEDIEEYKKVTSKSL 474
            DYLL+M+IG+LT+EKVQEL+A +D+++  +E+ KK T KSL
Sbjct: 1115 DYLLAMAIGSLTIEKVQELLADRDKMIIAVEDMKKHTPKSL 1155


>ref|XP_002314046.1| predicted protein [Populus trichocarpa] gi|222850454|gb|EEE88001.1|
            predicted protein [Populus trichocarpa]
          Length = 1482

 Score =  154 bits (389), Expect = 7e-36
 Identities = 87/158 (55%), Positives = 104/158 (65%)
 Frame = +1

Query: 1    GAIKKFVNPEQILEEFFPLRLEFYDXXXXXXXXXXXXXXXXXXXXVRFILAVVRGEIIVS 180
            G IKK+ NPEQILE FF LRLE+Y+                    VRFIL VVRGEIIV+
Sbjct: 1000 GVIKKYDNPEQILENFFHLRLEYYETRKKVLLENLEFELLKLENKVRFILGVVRGEIIVN 1059

Query: 181  NRKRKDLLLELQQKGFTPFPKKIKNVEAALAGAVGDAEENEDNSVIAGSTGGRDSDYDYL 360
            NRKR DLLLEL QKGF P PKK K   A +AGA  D EE ED+  ++G    R SDYDYL
Sbjct: 1060 NRKRADLLLELHQKGFNPIPKKSK---AVVAGATDDTEEAEDSPDVSGV---RASDYDYL 1113

Query: 361  LSMSIGTLTLEKVQELIASKDRLVEDIEEYKKVTSKSL 474
            LSM+IGTLTLE+VQ+L A +D+L  +++  +K T K L
Sbjct: 1114 LSMAIGTLTLERVQQLCADRDKLNGEVDSLRKTTPKVL 1151