BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028648
         (702 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...   286   3e-75
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]   286   3e-75
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   266   2e-69
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   254   9e-66
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...   254   9e-66

>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score =  286 bits (732), Expect = 3e-75
 Identities = 139/230 (60%), Positives = 178/230 (77%), Gaps = 2/230 (0%)
 Frame = +2

Query: 17  HRVRFHDTLVVGYAVAGKPDIALKLFGAMRFHGTDLDPFAYHVLLNALVEQSRFEFVQVV 196
           HRVRF+DTLV+GYAVAGKP+IAL+LF  MRF G DLD FAYHVLLNALVE++ F+  +VV
Sbjct: 174 HRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFDAFRVV 233

Query: 197 LKQLELRGFENEVTLCLRVKNYCKQNKLREAVFYLRRLQSKGDV--INDHMVGILVDAHC 370
           ++Q+ +RG +NE+T  + VKN+CKQ +L EA  ++ +L   G V     HMVG++VDA C
Sbjct: 234 VEQIRMRGLDNEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALC 293

Query: 371 KKNKFEGAHRLMEDFWGLSRFPLGHTYGIWNRDLVQAGKLDGVMNFLQSKKSTEGYVPEV 550
           K+ +F  A RL+E+F G     +   YG+W RDLV+AG+LDG + FL SKK +EGYVPEV
Sbjct: 294 KRKRFGEAGRLVEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEV 353

Query: 551 FRYNVLVCRLLRENRLDDVCDLLVEMMEGRISPDKVTMNAAMCFFCKAGM 700
             YN+L+CRLLRENRL++V DLL+EM EG+I PDKVTMNA +CFFCKAGM
Sbjct: 354 CGYNILICRLLRENRLEEVLDLLMEMREGQILPDKVTMNAVLCFFCKAGM 403


>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score =  286 bits (732), Expect = 3e-75
 Identities = 139/230 (60%), Positives = 178/230 (77%), Gaps = 2/230 (0%)
 Frame = +2

Query: 17  HRVRFHDTLVVGYAVAGKPDIALKLFGAMRFHGTDLDPFAYHVLLNALVEQSRFEFVQVV 196
           HRVRF+DTLV+GYAVAGKP+IAL+LF  MRF G DLD FAYHVLLNALVE++ F+  +VV
Sbjct: 174 HRVRFYDTLVMGYAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFDAFRVV 233

Query: 197 LKQLELRGFENEVTLCLRVKNYCKQNKLREAVFYLRRLQSKGDV--INDHMVGILVDAHC 370
           ++Q+ +RG +NE+T  + VKN+CKQ +L EA  ++ +L   G V     HMVG++VDA C
Sbjct: 234 VEQIRMRGLDNEITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALC 293

Query: 371 KKNKFEGAHRLMEDFWGLSRFPLGHTYGIWNRDLVQAGKLDGVMNFLQSKKSTEGYVPEV 550
           K+ +F  A RL+E+F G     +   YG+W RDLV+AG+LDG + FL SKK +EGYVPEV
Sbjct: 294 KRKRFGEAGRLVEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEV 353

Query: 551 FRYNVLVCRLLRENRLDDVCDLLVEMMEGRISPDKVTMNAAMCFFCKAGM 700
             YN+L+CRLLRENRL++V DLL+EM EG+I PDKVTMNA +CFFCKAGM
Sbjct: 354 CGYNILICRLLRENRLEEVLDLLMEMREGQILPDKVTMNAVLCFFCKAGM 403


>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  266 bits (681), Expect = 2e-69
 Identities = 130/224 (58%), Positives = 167/224 (74%)
 Frame = +2

Query: 29  FHDTLVVGYAVAGKPDIALKLFGAMRFHGTDLDPFAYHVLLNALVEQSRFEFVQVVLKQL 208
           F+ TL++GY+VAGKP +AL+LFG MRF G DLD FAYH+LLN+LVE+  F+ V  + KQ+
Sbjct: 194 FYSTLIMGYSVAGKPQVALQLFGKMRFLGRDLDAFAYHILLNSLVEECCFDAVDDIAKQI 253

Query: 209 ELRGFENEVTLCLRVKNYCKQNKLREAVFYLRRLQSKGDVINDHMVGILVDAHCKKNKFE 388
            +RGFE+ +T  + VK++CKQ  L EA  YLRR+  +G+  N   VGILV A C+K +FE
Sbjct: 254 SIRGFESHITHSIVVKSFCKQRMLDEAEAYLRRMILQGESGNGAAVGILVGAFCQKGQFE 313

Query: 389 GAHRLMEDFWGLSRFPLGHTYGIWNRDLVQAGKLDGVMNFLQSKKSTEGYVPEVFRYNVL 568
            A +L+E+F  L   PL   YG+W R+LVQ GKLDG ++F Q KK+ E YVPE+F YN L
Sbjct: 314 KAGQLIEEFRELRVVPLYPAYGVWLRNLVQKGKLDGALDFFQQKKTLESYVPEIFHYNAL 373

Query: 569 VCRLLRENRLDDVCDLLVEMMEGRISPDKVTMNAAMCFFCKAGM 700
           +CRLL+ENRL + CDLL+EMME   SPDKVTMNAA+ FFCKAGM
Sbjct: 374 LCRLLKENRLTEACDLLMEMMEDGFSPDKVTMNAALSFFCKAGM 417


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score =  254 bits (650), Expect = 9e-66
 Identities = 126/231 (54%), Positives = 164/231 (70%)
 Frame = +2

Query: 8   KMSHRVRFHDTLVVGYAVAGKPDIALKLFGAMRFHGTDLDPFAYHVLLNALVEQSRFEFV 187
           K+ H   F++ LV+GYA AGKP  AL LFG MRF G DLDPF+YHVLLN+LVE++ F+ V
Sbjct: 173 KLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENCFDAV 232

Query: 188 QVVLKQLELRGFENEVTLCLRVKNYCKQNKLREAVFYLRRLQSKGDVINDHMVGILVDAH 367
            V++KQ+ LRGF NE+T  L +K++CKQN+L EA  +L  L   G  +N  M+ +LV A 
Sbjct: 233 NVIIKQITLRGFVNEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAF 292

Query: 368 CKKNKFEGAHRLMEDFWGLSRFPLGHTYGIWNRDLVQAGKLDGVMNFLQSKKSTEGYVPE 547
           C+   FE A +L+E F  L    + H YG+W  +L++AGKL+  + FL S K    Y+P+
Sbjct: 293 CQSGNFERAWKLVEWFRDLQIVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGRYIPD 352

Query: 548 VFRYNVLVCRLLRENRLDDVCDLLVEMMEGRISPDKVTMNAAMCFFCKAGM 700
           VFRYN+L+ RLLRENRL +V DLL EMM+  ISPDKVTM+AAMCF CKAGM
Sbjct: 353 VFRYNMLIHRLLRENRLQEVFDLLTEMMDQHISPDKVTMDAAMCFLCKAGM 403


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score =  254 bits (650), Expect = 9e-66
 Identities = 126/231 (54%), Positives = 164/231 (70%)
 Frame = +2

Query: 8   KMSHRVRFHDTLVVGYAVAGKPDIALKLFGAMRFHGTDLDPFAYHVLLNALVEQSRFEFV 187
           K+ H   F++ LV+GYA AGKP  AL LFG MRF G DLDPF+YHVLLN+LVE++ F+ V
Sbjct: 197 KLYHMPCFYNILVMGYAAAGKPIFALHLFGKMRFQGLDLDPFSYHVLLNSLVEENCFDAV 256

Query: 188 QVVLKQLELRGFENEVTLCLRVKNYCKQNKLREAVFYLRRLQSKGDVINDHMVGILVDAH 367
            V++KQ+ LRGF NE+T  L +K++CKQN+L EA  +L  L   G  +N  M+ +LV A 
Sbjct: 257 NVIIKQITLRGFVNEITHYLMLKSFCKQNQLDEAETFLHDLVDSGKKLNGRMLDLLVGAF 316

Query: 368 CKKNKFEGAHRLMEDFWGLSRFPLGHTYGIWNRDLVQAGKLDGVMNFLQSKKSTEGYVPE 547
           C+   FE A +L+E F  L    + H YG+W  +L++AGKL+  + FL S K    Y+P+
Sbjct: 317 CQSGNFERAWKLVEWFRDLQIVSMEHVYGVWITELIRAGKLESALQFLNSSKLDGRYIPD 376

Query: 548 VFRYNVLVCRLLRENRLDDVCDLLVEMMEGRISPDKVTMNAAMCFFCKAGM 700
           VFRYN+L+ RLLRENRL +V DLL EMM+  ISPDKVTM+AAMCF CKAGM
Sbjct: 377 VFRYNMLIHRLLRENRLQEVFDLLTEMMDQHISPDKVTMDAAMCFLCKAGM 427