BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028611
         (410 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis t...    55   6e-06

>dbj|BAB10503.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1475

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 17/148 (11%)
 Frame = +2

Query: 2   CSHCGQSGHEKSRCYQLIGYPVGFFERXXXXXXXXXXXXXPIAAIVDXXXXXXXXXXVAP 181
           CSHCG +GH    CY++ GYPVGF  +              +A +            + P
Sbjct: 310 CSHCGYTGHNADTCYKIHGYPVGFKHKDKKTVTPSEKPKSVVANLALTDGKVSVTQGIGP 369

Query: 182 STI---PSPAAYSHISGQIQHLQGQLEAMLGNRTTPSFGSYTASASTTHSG--------- 325
             I       + S I   I +   QL       T  SF S      +T +G         
Sbjct: 370 DGIVELVGSMSKSQIQDVIAYFSTQLHNPAKPITVASFASTNNDNGSTFTGISFSPSTLR 429

Query: 326 -----TPSAYHASPSTWVIDSGASEHMT 394
                T S    S +TW+IDSGA+ H++
Sbjct: 430 LLCSLTSSKKVLSLNTWIIDSGATHHVS 457