BLASTX nr result

ID: Coptis24_contig00028589 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028589
         (252 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81140.1| hypothetical protein VITISV_007978 [Vitis vinifera]    67   2e-09
emb|CCH50966.1| T4.5 [Malus x robusta]                                 62   6e-08
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               60   2e-07
emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]    58   7e-07
ref|XP_002303321.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>emb|CAN81140.1| hypothetical protein VITISV_007978 [Vitis vinifera]
          Length = 791

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +1

Query: 1   KDIASGRILFQGPTEHGLYPIHLISSTHTRPHAFLSTAFVSTKAPASTWHSRLGHPDQAV 180
           KD+ +G  L  GP++ GLYPI+L   + ++ HAF  +  V  KA  +TWH RLGHP  + 
Sbjct: 173 KDLKTGETLMTGPSDRGLYPINLQQLSSSKFHAF--SMIVGVKASPATWHCRLGHPSSST 230

Query: 181 MAHLAHNKSVARSE 222
           + H+ HN S+  S+
Sbjct: 231 LHHVLHNYSLPISD 244


>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 28/66 (42%), Positives = 39/66 (59%)
 Frame = +1

Query: 1   KDIASGRILFQGPTEHGLYPIHLISSTHTRPHAFLSTAFVSTKAPASTWHSRLGHPDQAV 180
           KD+++G++LFQGP+E GLYP +  +S      A   TA +  KA   TWH RLGHP    
Sbjct: 684 KDLSTGKMLFQGPSEGGLYPFYWNASNGVSGIAISPTALMIAKADIHTWHRRLGHPSGGT 743

Query: 181 MAHLAH 198
           +  + H
Sbjct: 744 LHSVVH 749


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 28/70 (40%), Positives = 43/70 (61%)
 Frame = +1

Query: 1   KDIASGRILFQGPTEHGLYPIHLISSTHTRPHAFLSTAFVSTKAPASTWHSRLGHPDQAV 180
           KD+ +G++L+ G +E+GLYP    S T        S A+VS++  A TWHSRLGH    +
Sbjct: 442 KDLKTGKMLYHGKSENGLYPFRFPSKTSK---VSSSLAYVSSRVSAETWHSRLGHASSTI 498

Query: 181 MAHLAHNKSV 210
           ++ +  NK+V
Sbjct: 499 VSKVLSNKAV 508


>emb|CAN67073.1| hypothetical protein VITISV_011746 [Vitis vinifera]
          Length = 879

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/70 (42%), Positives = 41/70 (58%)
 Frame = +1

Query: 1   KDIASGRILFQGPTEHGLYPIHLISSTHTRPHAFLSTAFVSTKAPASTWHSRLGHPDQAV 180
           KDI +G  L +G +E GLYPI L S +  + HA   +A V  KA  S WHSRLGH    +
Sbjct: 234 KDIQTGTTLLEGKSEGGLYPIQLXSMSINKSHAL--SAVVGIKASVSIWHSRLGHASLPI 291

Query: 181 MAHLAHNKSV 210
           ++ L +  S+
Sbjct: 292 VSQLLNKHSL 301


>ref|XP_002303321.1| predicted protein [Populus trichocarpa] gi|222840753|gb|EEE78300.1|
           predicted protein [Populus trichocarpa]
          Length = 324

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/74 (40%), Positives = 42/74 (56%)
 Frame = +1

Query: 1   KDIASGRILFQGPTEHGLYPIHLISSTHTRPHAFLSTAFVSTKAPASTWHSRLGHPDQAV 180
           KDI +G  L  GP+++ LYPI+L   + +  HA   T  VS KAP  TWH  LGH    +
Sbjct: 238 KDILTGDTLLTGPSDNELYPINLCQLSSSSYHALTMT--VSVKAPTFTWHCCLGHTSSDI 295

Query: 181 MAHLAHNKSVARSE 222
           + H+  N S+  S+
Sbjct: 296 LHHVISNFSLPVSD 309


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