BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028571
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam...   161   5e-38
emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|72677...   161   5e-38
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   157   7e-37
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...   152   4e-35
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...   151   5e-35

>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
            42.57) [Arabidopsis thaliana]
          Length = 1662

 Score =  161 bits (408), Expect = 5e-38
 Identities = 77/168 (45%), Positives = 111/168 (66%)
 Frame = +1

Query: 1    KPVITKRENDILGEVPTDMEIWNVVKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVK 180
            KP++T++ ND L +  +D+EI+N +  +   KAPGPDG    FY+SCWE+VGP + K VK
Sbjct: 795  KPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVK 854

Query: 181  DFFTYNMLPPDLNETFITLIPKIPCPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKI 360
             FF  + +   +N T I +IPKI  P+ +S +RPI+LCN  YKIISK L  RLK HL  I
Sbjct: 855  IFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAI 914

Query: 361  ISPFQGAFVKGRFIGDNIGLASEIFHHMRMMKKKRQGWLALKLDMKKA 504
            +S  Q AF+ GR + DN+ +A E+ H ++  K+  Q ++A+K D+ KA
Sbjct: 915  VSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 962


>emb|CAB40051.1| putative protein [Arabidopsis thaliana] gi|7267781|emb|CAB81184.1|
            putative protein [Arabidopsis thaliana]
          Length = 1294

 Score =  161 bits (408), Expect = 5e-38
 Identities = 77/168 (45%), Positives = 111/168 (66%)
 Frame = +1

Query: 1    KPVITKRENDILGEVPTDMEIWNVVKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVK 180
            KP++T++ ND L +  +D+EI+N +  +   KAPGPDG    FY+SCWE+VGP + K VK
Sbjct: 775  KPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIKEVK 834

Query: 181  DFFTYNMLPPDLNETFITLIPKIPCPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKI 360
             FF  + +   +N T I +IPKI  P+ +S +RPI+LCN  YKIISK L  RLK HL  I
Sbjct: 835  IFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAI 894

Query: 361  ISPFQGAFVKGRFIGDNIGLASEIFHHMRMMKKKRQGWLALKLDMKKA 504
            +S  Q AF+ GR + DN+ +A E+ H ++  K+  Q ++A+K D+ KA
Sbjct: 895  VSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 942


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score =  157 bits (398), Expect = 7e-37
 Identities = 77/165 (46%), Positives = 106/165 (64%)
 Frame = +1

Query: 10  ITKRENDILGEVPTDMEIWNVVKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVKDFF 189
           I++ E   L +  T  E+ + VK +   KAPGPDG+Q VFYQ CWE VGP +T+ V +FF
Sbjct: 280 ISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVFYQQCWETVGPSVTRFVLEFF 339

Query: 190 TYNMLPPDLNETFITLIPKIPCPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKIISP 369
              +LP   N+  + LI K+  P+ I +FRP+SLCN  +KII+K++  RLK  + K+I P
Sbjct: 340 ETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFKIITKMMVTRLKNVISKLIGP 399

Query: 370 FQGAFVKGRFIGDNIGLASEIFHHMRMMKKKRQGWLALKLDMKKA 504
            Q +F+ GR   DNI L  E  H MR  KK R+GW+ LKLD++KA
Sbjct: 400 AQASFIPGRLSIDNIVLVQEAVHSMR-RKKGRKGWMLLKLDLEKA 443


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score =  152 bits (383), Expect = 4e-35
 Identities = 74/167 (44%), Positives = 106/167 (63%)
 Frame = +1

Query: 4   PVITKRENDILGEVPTDMEIWNVVKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVKD 183
           P +T+ E + L    T  E+   V+ +   KAPGPDG+Q VFYQ CWE VG  ++K V +
Sbjct: 230 PRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVSKFVME 289

Query: 184 FFTYNMLPPDLNETFITLIPKIPCPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKII 363
           FF   +LP   N+  + L+ K+  P+ I++FRP+SLCN  +KII+K++  RLK  + K+I
Sbjct: 290 FFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFKIITKMMVIRLKNVISKLI 349

Query: 364 SPFQGAFVKGRFIGDNIGLASEIFHHMRMMKKKRQGWLALKLDMKKA 504
            P Q +F+ GR   DNI +  E  H MR  KK R+GW+ LKLD++KA
Sbjct: 350 GPAQASFIPGRLSFDNIVVVQEAVHSMR-RKKGRKGWMLLKLDLEKA 395


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score =  151 bits (382), Expect = 5e-35
 Identities = 76/167 (45%), Positives = 107/167 (64%)
 Frame = +1

Query: 4   PVITKRENDILGEVPTDMEIWNVVKKLQPLKAPGPDGFQGVFYQSCWEVVGPLITKTVKD 183
           P++++ +N  L    +  EI N V  L P K+PGPDGF   F+Q  W ++G  + + V+ 
Sbjct: 430 PIVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQA 489

Query: 184 FFTYNMLPPDLNETFITLIPKIPCPDHISKFRPISLCNFTYKIISKLLANRLKTHLHKII 363
           FF    +  ++N TF+ LIPK+  P + + FRPISLC+  YK+ISK++ NRLK  L KII
Sbjct: 490 FFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLKITLGKII 549

Query: 364 SPFQGAFVKGRFIGDNIGLASEIFHHMRMMKKKRQGWLALKLDMKKA 504
            P QGAF+  R I DNI +A E+FH  +  K  R GW+A+KLDM+KA
Sbjct: 550 HPLQGAFIPERLIQDNILIAHEVFHSFK-NKTGRGGWIAIKLDMEKA 595