BLASTX nr result
ID: Coptis24_contig00028558
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028558
(470 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK25877.1|AF360167_1 putative translation elongation factor ... 93 2e-21
gb|ABQ81941.1| elongation factor 1-alpha [Spirogyra sp. FWAC125] 93 2e-21
ref|XP_003618775.1| Elongation factor 1-alpha [Medicago truncatu... 93 2e-21
gb|AAF79822.1|AC026875_2 T6D22.2 [Arabidopsis thaliana] 93 2e-21
ref|XP_002892424.1| T6D22.2 [Arabidopsis lyrata subsp. lyrata] g... 93 2e-21
>gb|AAK25877.1|AF360167_1 putative translation elongation factor eEF-1 alpha chain A4
[Arabidopsis thaliana]
Length = 449
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 34.7 bits (78), Expect(2) = 2e-21
Identities = 25/61 (40%), Positives = 27/61 (44%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTRLDAGYVKMILFKPM 139
C VLIID TTGGFEAG ISKDGQTR A + K M
Sbjct: 111 CAVLIIDSTTGGFEAG----------------------ISKDGQTREHAFLAFTLGVKQM 148
Query: 138 V 136
+
Sbjct: 149 I 149
Score = 73.6 bits (179), Expect = 2e-11
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKV 16
DAG VKM KPMVVETF EYPPLGRFA+RDM + VAV VI+SV+ K P+G KV
Sbjct: 386 DAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKV 439
>gb|ABQ81941.1| elongation factor 1-alpha [Spirogyra sp. FWAC125]
Length = 275
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 40 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 91
Score = 34.7 bits (78), Expect(2) = 2e-21
Identities = 25/61 (40%), Positives = 27/61 (44%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTRLDAGYVKMILFKPM 139
C VLIID TTGGFEAG ISKDGQTR A + K M
Sbjct: 94 CAVLIIDSTTGGFEAG----------------------ISKDGQTREHALLAYTLGVKQM 131
Query: 138 V 136
+
Sbjct: 132 I 132
>ref|XP_003618775.1| Elongation factor 1-alpha [Medicago truncatula]
gi|355493790|gb|AES74993.1| Elongation factor 1-alpha
[Medicago truncatula]
Length = 987
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 597 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 648
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 111 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 134
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 651 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 674
Score = 76.3 bits (186), Expect = 2e-12
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKVRMYAA 1
DAG +KM+ KPMVVETF EYPPLGRFA+RDM + VAV VI++VE K P+G KV AA
Sbjct: 386 DAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAA 444
Score = 76.3 bits (186), Expect = 2e-12
Identities = 39/59 (66%), Positives = 46/59 (77%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKVRMYAA 1
DAG +KM+ KPMVVETF EYPPLGRFA+RDM + VAV VI++VE K P+G KV AA
Sbjct: 926 DAGIIKMVPTKPMVVETFAEYPPLGRFAVRDMRQTVAVGVIKAVEKKDPTGAKVTKAAA 984
>gb|AAF79822.1|AC026875_2 T6D22.2 [Arabidopsis thaliana]
Length = 967
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 575 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 626
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 111 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 134
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 629 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 652
Score = 73.6 bits (179), Expect = 2e-11
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKV 16
DAG VKM KPMVVETF EYPPLGRFA+RDM + VAV VI+SV+ K P+G KV
Sbjct: 386 DAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKV 439
Score = 73.6 bits (179), Expect = 2e-11
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKV 16
DAG VKM KPMVVETF EYPPLGRFA+RDM + VAV VI+SV+ K P+G KV
Sbjct: 904 DAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKV 957
>ref|XP_002892424.1| T6D22.2 [Arabidopsis lyrata subsp. lyrata]
gi|297338266|gb|EFH68683.1| T6D22.2 [Arabidopsis lyrata
subsp. lyrata]
Length = 951
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 57 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 108
Score = 92.8 bits (229), Expect(2) = 2e-21
Identities = 46/52 (88%), Positives = 46/52 (88%), Gaps = 5/52 (9%)
Frame = -2
Query: 469 AWVLDKLKAERERGITIDIALWKFETTKY*C-----PGHRDFIKNMITGTSQ 329
AWVLDKLKAERERGITIDIALWKFETTKY C PGHRDFIKNMITGTSQ
Sbjct: 559 AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQ 610
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 111 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 134
Score = 34.3 bits (77), Expect(2) = 2e-21
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = -3
Query: 318 CDVLIIDYTTGGFEAGXXXXXXXXXXXXXXXXXXXXXXISKDGQTR 181
C VLIID TTGGFEAG ISKDGQTR
Sbjct: 613 CAVLIIDSTTGGFEAG----------------------ISKDGQTR 636
Score = 73.6 bits (179), Expect = 2e-11
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKV 16
DAG VKM KPMVVETF EYPPLGRFA+RDM + VAV VI+SV+ K P+G KV
Sbjct: 386 DAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKV 439
Score = 73.6 bits (179), Expect = 2e-11
Identities = 38/54 (70%), Positives = 43/54 (79%)
Frame = -3
Query: 177 DAGYVKMILFKPMVVETFFEYPPLGRFAMRDMCRNVAVRVIRSVE*KYPSGVKV 16
DAG VKM KPMVVETF EYPPLGRFA+RDM + VAV VI+SV+ K P+G KV
Sbjct: 888 DAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVDKKDPTGAKV 941