BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028554
         (366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|7526578...    69   3e-10
ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata sub...    68   9e-10
ref|XP_002534512.1| conserved hypothetical protein [Ricinus comm...    68   9e-10
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g...    68   9e-10
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    67   1e-09

>ref|NP_566322.1| F-box protein [Arabidopsis thaliana]
           gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box
           protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21
           unknown protein [Arabidopsis thaliana]
           gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21
           [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1|
           At3g07870 [Arabidopsis thaliana]
           gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis
           thaliana]
          Length = 417

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 42/112 (37%), Positives = 57/112 (50%)
 Frame = -3

Query: 337 WRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIE 158
           WRSLGK P+ F + S             S+ LVNG LH++      +   + + F L+ E
Sbjct: 224 WRSLGKAPYKFVKRS-------------SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDE 270

Query: 157 EFQKLPLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESS 2
           EF+++P  P  G    +N  LV L  CLC V   N   + IWVMK YGV+ S
Sbjct: 271 EFKEIP-KPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKES 321


>ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297328394|gb|EFH58813.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 415

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 41/112 (36%), Positives = 57/112 (50%)
 Frame = -3

Query: 337 WRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEEVILFKLDIE 158
           WRSLGK P+ F + S             S+ LVNG LH++      +   + + F L+ E
Sbjct: 222 WRSLGKAPYKFMKRS-------------SEALVNGRLHFVTRPRRHVPDRKFVSFDLEDE 268

Query: 157 EFQKLPLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVESS 2
           EF+++P  P  G    +N  LV L  CLC V   N   + IWVM+ YGV+ S
Sbjct: 269 EFKEIP-KPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMETYGVKES 319


>ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis]
           gi|223525141|gb|EEF27869.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 383

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 39/121 (32%), Positives = 63/121 (52%)
 Frame = -3

Query: 364 EVYTLGTDEWRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEE 185
           ++ T+G+  WRSLG+ P+Y           PI  ++ S + VNG LHW+          +
Sbjct: 190 QILTVGSPSWRSLGETPYY-----------PI--HSPSQVYVNGRLHWVNWPVRYRPGRK 236

Query: 184 VILFKLDIEEFQKLPLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVES 5
           +I F L+ E+F+++PL PG       +  LV + +CL      N     +WVMK+YG++ 
Sbjct: 237 LISFDLEDEKFREVPL-PGSDGIKWGDYMLVVIRDCLSAAVYRNYGSFEVWVMKDYGLKE 295

Query: 4   S 2
           S
Sbjct: 296 S 296


>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
           gi|222861279|gb|EEE98821.1| f-box family protein
           [Populus trichocarpa]
          Length = 422

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 43/121 (35%), Positives = 55/121 (45%)
 Frame = -3

Query: 364 EVYTLGTDEWRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEE 185
           ++ TLG  EWRSLGKV +   R               S  LVNG LHWI     +  A  
Sbjct: 209 QILTLGCPEWRSLGKVSYRLVR-------------RASGALVNGRLHWISRPCRNKPARR 255

Query: 184 VILFKLDIEEFQKLPLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVES 5
           ++ F L  E+F+++   P  G     N  LV L  CL      N   + IWVMK Y V+ 
Sbjct: 256 LVSFDLTDEQFREVS-KPDCGGLNRCNYHLVVLRGCLSAAVYCNYGRLEIWVMKEYNVKE 314

Query: 4   S 2
           S
Sbjct: 315 S 315


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 41/121 (33%), Positives = 56/121 (46%)
 Frame = -3

Query: 364 EVYTLGTDEWRSLGKVPFYFPRYSNNNYVSPIRDNNGSDILVNGALHWIGSFSNSMTAEE 185
           ++ TLG   WRSLGKV +   R               S+ LVNG LHW+     +  A  
Sbjct: 208 QILTLGCPGWRSLGKVSYRLVR-------------RASETLVNGRLHWVSRPCRNKPARR 254

Query: 184 VILFKLDIEEFQKLPLPPGLGSAANSNRFLVELGECLCVVHVINAEYIRIWVMKNYGVES 5
           ++ F L  E+F+++P  P  G     +  L  L  CL V    N   + IWVMK Y V+ 
Sbjct: 255 LVSFDLTDEQFREVP-KPDCGGLNRCDYHLAVLRGCLSVAVYCNYGRLEIWVMKEYNVKE 313

Query: 4   S 2
           S
Sbjct: 314 S 314