BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028455
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    47   1e-07
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    49   3e-07
emb|CAN60637.1| hypothetical protein VITISV_022223 [Vitis vinifera]    48   2e-06
emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulga...    52   3e-06
emb|CAN77052.1| hypothetical protein VITISV_002154 [Vitis vinifera]    48   5e-06

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 47.4 bits (111), Expect(2) = 1e-07
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = -3

Query: 207 EFLLAVLKQFGFDDIWCQWVMSIISSAHISVLVNGEPCG 91
           +FLL VLKQFGF + +C W+ +I+ SA +S+ +NG   G
Sbjct: 273 KFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQG 311



 Score = 33.5 bits (75), Expect(2) = 1e-07
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 85  GYFKLGSGTRQGDPMPPMLCCTSQ 14
           GYF    G RQGDP+ P+L C ++
Sbjct: 311 GYFSCSRGVRQGDPLSPLLFCLAE 334


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 48.5 bits (114), Expect(2) = 3e-07
 Identities = 21/38 (55%), Positives = 30/38 (78%)
 Frame = -3

Query: 204 FLLAVLKQFGFDDIWCQWVMSIISSAHISVLVNGEPCG 91
           FLLAVL++FGFD+ +  W++ I+ SA +SVLVNG+  G
Sbjct: 600 FLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVG 637



 Score = 30.8 bits (68), Expect(2) = 3e-07
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 85  GYFKLGSGTRQGDPMPPMLCC 23
           G+F    G RQGDP+ P+L C
Sbjct: 637 GFFTCSHGVRQGDPLSPLLFC 657


>emb|CAN60637.1| hypothetical protein VITISV_022223 [Vitis vinifera]
          Length = 1887

 Score = 47.8 bits (112), Expect(2) = 2e-06
 Identities = 18/39 (46%), Positives = 28/39 (71%)
 Frame = -3

Query: 207  EFLLAVLKQFGFDDIWCQWVMSIISSAHISVLVNGEPCG 91
            +FLLAV+++ GF + WC+W+   +S+   SV+VNG P G
Sbjct: 1390 DFLLAVMEKMGFGERWCRWIKWCLSTVRYSVMVNGSPTG 1428



 Score = 28.9 bits (63), Expect(2) = 2e-06
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 88   TGYFKLGSGTRQGDPMPPML 29
            TG+F+   G RQGDP+ P L
Sbjct: 1427 TGFFQSSRGLRQGDPLSPYL 1446


>emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 52.0 bits (123), Expect(2) = 3e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -3

Query: 204 FLLAVLKQFGFDDIWCQWVMSIISSAHISVLVNGEPC 94
           FL  VLK+  F D WC+W+M+ +S+A +S+LVNG PC
Sbjct: 585 FLEWVLKEMNFPDQWCKWIMNCVSTAAVSILVNGSPC 621



 Score = 23.9 bits (50), Expect(2) = 3e-06
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 79  FKLGSGTRQGDPMPPML 29
           FKL  G RQGDP+   L
Sbjct: 624 FKLQRGLRQGDPLSSFL 640


>emb|CAN77052.1| hypothetical protein VITISV_002154 [Vitis vinifera]
          Length = 1962

 Score = 47.8 bits (112), Expect(2) = 5e-06
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = -3

Query: 207 EFLLAVLKQFGFDDIWCQWVMSIISSAHISVLVNGEPCG 91
           +FLLAVLKQ GF + W  W+   IS+   SVL+NG P G
Sbjct: 583 KFLLAVLKQMGFGERWIMWIEWCISTVRYSVLINGSPSG 621



 Score = 27.3 bits (59), Expect(2) = 5e-06
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 88  TGYFKLGSGTRQGDPMPPML 29
           +G+F+   G RQGDP+ P L
Sbjct: 620 SGFFQSSRGLRQGDPLSPYL 639