BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028430
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB58571.1| predicted to encode 4983 amino acids with a predi...   110   2e-22
ref|XP_715467.1| ubiquitin-ribosomal protein fusion S27a [Candid...   109   3e-22
gb|ADD52202.1| ubiquitin [Catharanthus roseus] gi|341869050|gb|A...   107   8e-22
ref|XP_002267452.1| PREDICTED: polyubiquitin 4-like isoform 1 [V...   107   8e-22
emb|CAI51312.2| polyubiquitin [Capsicum chinense]                     107   8e-22

>gb|AAB58571.1| predicted to encode 4983 amino acids with a predicted molecular mass
            of 558 kDa; ILLC-BVDV ORF [Bovine viral diarrhea virus 1]
          Length = 4983

 Score =  110 bits (274), Expect = 2e-22
 Identities = 60/86 (69%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +3

Query: 72   RMQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLED 251
            RMQIFVKTLTGKTITLEVE SDTI+NVKAKIQ + GIPP  Q+LIF  +QLE   K LED
Sbjct: 2594 RMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE---KQLED 2650

Query: 252  GRTLAECNIQNESTVHMFLNF-GSGP 326
            GRTL++ NIQ EST+H+ L   G GP
Sbjct: 2651 GRTLSDYNIQKESTLHLVLRLRGGGP 2676


>ref|XP_715467.1| ubiquitin-ribosomal protein fusion S27a [Candida albicans SC5314]
           gi|68481245|ref|XP_715397.1| ubiquitin-ribosomal protein
           fusion S27a [Candida albicans SC5314]
           gi|46437018|gb|EAK96371.1| ubiquitin-ribosomal protein
           fusion S27a [Candida albicans SC5314]
           gi|46437090|gb|EAK96442.1| ubiquitin-ribosomal protein
           fusion S27a [Candida albicans SC5314]
          Length = 193

 Score =  109 bits (272), Expect = 3e-22
 Identities = 59/106 (55%), Positives = 71/106 (66%)
 Frame = +3

Query: 6   FLISSGDFLINKNAGXXXXXXXRMQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIP 185
           F  ++  FL+ K          +MQIFVKTLTGKTITLEVESSDTIDNVK+KIQ + GIP
Sbjct: 20  FFFTNPTFLVRKKHSYLPTSQFKMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 79

Query: 186 PPLQKLIFVDEQLEDGRKLLEDGRTLAECNIQNESTVHMFLNFGSG 323
           P  Q+LIF  +Q       LEDGRTL++ NIQ EST+H+ L    G
Sbjct: 80  PDQQRLIFAGKQ-------LEDGRTLSDYNIQKESTLHLVLRLRGG 118


>gb|ADD52202.1| ubiquitin [Catharanthus roseus] gi|341869050|gb|AEK98798.1|
           ubiquitin [Carthamus tinctorius]
          Length = 381

 Score =  107 bits (268), Expect = 8e-22
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDT DNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 129

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+CNIQ EST+H+ L    G
Sbjct: 130 RTLADCNIQKESTLHLVLRLRGG 152



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 205

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 206 RTLADYNIQKESTLHLVLRLRGG 228



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 281

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 282 RTLADYNIQKESTLHLVLRLRGG 304



 Score =  103 bits (257), Expect = 1e-20
 Identities = 56/83 (67%), Positives = 62/83 (74%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAK Q + GIPP  Q+LIF  +Q       LEDG
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKTQDKEGIPPDQQRLIFAGKQ-------LEDG 53

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 54  RTLADYNIQKESTLHLVLRLRGG 76



 Score =  103 bits (256), Expect = 2e-20
 Identities = 56/83 (67%), Positives = 62/83 (74%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LI   +Q       LEDG
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLILAGKQ-------LEDG 357

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 358 RTLADYNIQKESTLHLVLRLRGG 380


>ref|XP_002267452.1| PREDICTED: polyubiquitin 4-like isoform 1 [Vitis vinifera]
           gi|359488113|ref|XP_003633702.1| PREDICTED:
           polyubiquitin 4-like isoform 2 [Vitis vinifera]
          Length = 386

 Score =  107 bits (268), Expect = 8e-22
 Identities = 60/86 (69%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 357

Query: 255 RTLAECNIQNESTVHMFLNF--GSGP 326
           RTLA+ NIQ EST+H+ L    GSGP
Sbjct: 358 RTLADYNIQKESTLHLVLRLRGGSGP 383



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 53

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 54  RTLADYNIQKESTLHLVLRLRGG 76



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 129

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 130 RTLADYNIQKESTLHLVLRLRGG 152



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 205

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 206 RTLADYNIQKESTLHLVLRLRGG 228



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 281

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 282 RTLADYNIQKESTLHLVLRLRGG 304


>emb|CAI51312.2| polyubiquitin [Capsicum chinense]
          Length = 153

 Score =  107 bits (268), Expect = 8e-22
 Identities = 58/83 (69%), Positives = 64/83 (77%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 53

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L F  G
Sbjct: 54  RTLADYNIQKESTLHLVLRFRGG 76



 Score =  105 bits (262), Expect = 4e-21
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +3

Query: 75  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQAERGIPPPLQKLIFVDEQLEDGRKLLEDG 254
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ + GIPP  Q+LIF  +Q       LEDG
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-------LEDG 129

Query: 255 RTLAECNIQNESTVHMFLNFGSG 323
           RTLA+ NIQ EST+H+ L    G
Sbjct: 130 RTLADYNIQKESTLHLVLRLRGG 152