BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028322
         (1220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containi...   387   e-105
ref|XP_002521663.1| pentatricopeptide repeat-containing protein,...   373   e-101
ref|XP_003593286.1| Pentatricopeptide repeat-containing protein ...   371   e-100
gb|ABN05862.1| Tetratricopeptide-like helical [Medicago truncatula]   371   e-100
ref|XP_002867315.1| pentatricopeptide repeat-containing protein ...   344   3e-92

>ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
            mitochondrial-like [Glycine max]
          Length = 601

 Score =  387 bits (993), Expect = e-105
 Identities = 199/403 (49%), Positives = 267/403 (66%), Gaps = 4/403 (0%)
 Frame = +1

Query: 22   RFISNASSTLSLAISEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQ 201
            R ++  + T S   +++++ +SKGL+ Q L+ +  E+H C      F LPSVIKA S+AQ
Sbjct: 7    RLLTTVAPTCSSPSNQIKSFLSKGLYHQTLQLF-SELHLCGHSSISFFLPSVIKASSSAQ 65

Query: 202  FLHFGIQLHCMALKTGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIIT 381
               FG QLHC+ALKTGS  + V++NS+I+MY K S   +A Q+FD MP RD +TWNS+I 
Sbjct: 66   CHTFGTQLHCLALKTGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLIN 125

Query: 382  CYVQNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEIN 561
             Y+ NGY+ EA+     +    + PKPEL+AS++S+CGR    ++G++IHA  V N  I 
Sbjct: 126  GYLHNGYLEEALEALNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIG 185

Query: 562  QCTFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAM 741
            Q  F STAL+D Y +C DS  A ++F  M+ +N VSWT MI+GC  ++ Y  +   FRAM
Sbjct: 186  QSMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAM 245

Query: 742  LVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGT 921
              EG  PNRVT IA+L ACAE  ++KHGK+IHGYA R   ES    ++AL++MYC+C   
Sbjct: 246  QAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEP 305

Query: 922  QGAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIP 1101
               A LIFE S  RDVV+WSS+IGS+S+ GDS  A+KLFN+MR E I PN +TLLA+I  
Sbjct: 306  MHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISA 365

Query: 1102 ----HSVNHGRAVHGYILKTGFGSDTYVGNSLIDMYAKCGHLN 1218
                 S+ HG  +HGYI K GF     VGN+LI+MYAKCG LN
Sbjct: 366  CTNLSSLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLN 408



 Score =  169 bits (427), Expect = 2e-39
 Identities = 107/357 (29%), Positives = 179/357 (50%), Gaps = 2/357 (0%)
 Frame = +1

Query: 64   SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFLHFGIQLHCMALK 243
            S +   +  G  ++ALE    +V+      K  +L SV+  C        G Q+H + + 
Sbjct: 122  SLINGYLHNGYLEEALEALN-DVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVV 180

Query: 244  TGSV-LDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAIT 420
               +   + ++ +L+  Y +C  +  A ++FD M ++++V+W ++I+  + +    EA  
Sbjct: 181  NERIGQSMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFA 240

Query: 421  KFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMY 600
             F+ M +  + P      ++LS C   G ++ GKEIH  A  +G    C   S+AL++MY
Sbjct: 241  CFRAMQAEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHG-FESCPSFSSALVNMY 299

Query: 601  SKCFDSK-AAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTL 777
             +C +    A  IF+    R+ V W+++I   +       +L LF  M  E   PN VTL
Sbjct: 300  CQCGEPMHLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTL 359

Query: 778  IAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQ 957
            +AV+ AC  LS LKHG  +HGY  +        +  ALI+MY KC    G+  +  E   
Sbjct: 360  LAVISACTNLSSLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLE-MP 418

Query: 958  RRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIPHSVNHGRAV 1128
             RD V WSS+I +Y  +G    A+++F +M   G+ P++IT LA++   + NH   V
Sbjct: 419  NRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVL--SACNHAGLV 473



 Score = 89.7 bits (221), Expect = 1e-15
 Identities = 64/251 (25%), Positives = 114/251 (45%), Gaps = 1/251 (0%)
 Frame = +1

Query: 103  QALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFLHFGIQLHCMALKTGSVLDIVIANSL 282
            +AL+ + K +   +    +  L +VI AC+    L  G  LH    K G    I + N+L
Sbjct: 339  KALKLFNK-MRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGFCFSISVGNAL 397

Query: 283  ISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAITKFKQMCSYSIHPKP 462
            I+MYAKC     + ++F  MP RD VTW+S+I+ Y  +G   +A+  F +M    + P  
Sbjct: 398  INMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNERGVKPDA 457

Query: 463  ELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMYSKCFDSKAAYQIFQ 642
                ++LS C   G +  G+ I  +  ++ EI         L+D+  +    + A +I +
Sbjct: 458  ITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLEYALEIRR 517

Query: 643  CMKQRNEVS-WTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLK 819
             M  +     W+++++ C  + R  I+ ++    L+    PN      +L       Y +
Sbjct: 518  TMPMKPSARIWSSLVSACKLHGRLDIA-EMLAPQLIRS-EPNNAGNYTLL----NTIYAE 571

Query: 820  HGKQIHGYAIR 852
            HG  +    +R
Sbjct: 572  HGHWLDTEQVR 582


>ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223539054|gb|EEF40650.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 578

 Score =  373 bits (957), Expect = e-101
 Identities = 190/381 (49%), Positives = 257/381 (67%), Gaps = 4/381 (1%)
 Frame = +1

Query: 79   LVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFLHFGIQLHCMALKTGSVL 258
            +VSKGL  Q L+FY KE+H    +   +I+PSVIKACS +   HFGIQL+ + LK+G   
Sbjct: 1    MVSKGLNHQILKFY-KELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDS 59

Query: 259  DIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAITKFKQMC 438
            D VI NS IS YAK S TE+A ++FD MP++D ++WN II  Y QNGY T+    FK+M 
Sbjct: 60   DFVICNSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMY 119

Query: 439  SYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMYSKCFDS 618
               I PKPEL+AS++SVC R G+++LG+ IHA  + +G I +  F  T+L+D Y K  DS
Sbjct: 120  ECGIVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDS 179

Query: 619  KAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPAC 798
              A ++F  ++ +N VSWTA+++GC+ N  Y+++LD FRAM + G RPNRVTLIA+LPA 
Sbjct: 180  LMALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAF 239

Query: 799  AELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMW 978
            AEL   K GK+IHGYA R   + +    ++LI +YC+       A L FE S  +DVVMW
Sbjct: 240  AELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMW 299

Query: 979  SSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIP----HSVNHGRAVHGYILK 1146
            SS+IGSY ++ DS  A+KLF  MR +G  PNS+TLLA+I       S+ +G   HGYI+K
Sbjct: 300  SSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVK 359

Query: 1147 TGFGSDTYVGNSLIDMYAKCG 1209
             G   DTY+GN+LI+MY+KCG
Sbjct: 360  CGLNFDTYIGNALINMYSKCG 380



 Score =  119 bits (298), Expect = 2e-24
 Identities = 86/308 (27%), Positives = 151/308 (49%), Gaps = 8/308 (2%)
 Frame = +1

Query: 214  GIQLHCMALKTGSVLDIVIANSLISMYAKC-SSTETASQLFDAMPIRDMVTWNSIITCYV 390
            G ++H  A + G  LD    +SLI +Y +     + A   F+   ++D+V W+SII  Y 
Sbjct: 248  GKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSYC 307

Query: 391  QNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCT 570
            ++    EA+  F+ M +    P    + ++++ C    +L+ G   H   V  G +N  T
Sbjct: 308  RSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCG-LNFDT 366

Query: 571  FTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVE 750
            +   ALI+MYSKC    A++QIF+ M  ++ VSW+ +IT    +     +L LF  M ++
Sbjct: 367  YIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQ 426

Query: 751  GFRPNRVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLA------AALIDMYCKC 912
            G  P+ +T +AVL AC     +K G+QI       + + + K++      A L+D+  K 
Sbjct: 427  GVEPDAMTFLAVLSACNHSGLVKEGQQIF-----DNVKKDGKVSLTVEHYACLVDLLGKS 481

Query: 913  EGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQM-RMEGINPNSITLLA 1089
                 A  ++     +    +WSS++ +   +G    A +L  ++ + E  N  + TLL+
Sbjct: 482  GKVDDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHTLLS 541

Query: 1090 IIIPHSVN 1113
            +I   S N
Sbjct: 542  MIYAESGN 549



 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 54/194 (27%), Positives = 99/194 (51%), Gaps = 1/194 (0%)
 Frame = +1

Query: 166 LPSVIKACSTAQFLHFGIQLHCMALKTGSVLDIVIANSLISMYAKCSSTETASQLFDAMP 345
           L +VI AC+T   L  G   H   +K G   D  I N+LI+MY+KC     + Q+F  M 
Sbjct: 334 LLAVITACTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQIFKEMH 393

Query: 346 IRDMVTWNSIITCYVQNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKE 525
           I+D V+W+++IT Y  +G+  EA+  F +M    + P      ++LS C  +G ++ G++
Sbjct: 394 IKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQ 453

Query: 526 IHARAVSNGEINQCTFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVS-WTAMITGCTTN 702
           I      +G+++        L+D+  K      A+ I + M  +   + W+++++ C  +
Sbjct: 454 IFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIH 513

Query: 703 ERYSISLDLFRAML 744
            R  I+  L + ++
Sbjct: 514 GRLEIAERLAQELI 527


>ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355482334|gb|AES63537.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  371 bits (952), Expect = e-100
 Identities = 197/408 (48%), Positives = 264/408 (64%), Gaps = 9/408 (2%)
 Frame = +1

Query: 22   RFISNASSTLSLAISEVQNLVSKGLFQQALEFYRK-EVHPCQFHEKHFILPSVIKACSTA 198
            RF+S+   T S +   ++ LVS GL+ Q L+F+ +       F+   F+LPSVIKACS  
Sbjct: 21   RFLSSVVPTHSPS-DHIKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFT 79

Query: 199  QFLHFGIQLHCMALKTGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSII 378
             F  FG QLHC+A  TGS  D +++NS+ISMYAK    E+A Q+FD MP RD +TWNS+I
Sbjct: 80   HFHAFGTQLHCLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMI 139

Query: 379  TCYVQNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNL--RLGKEIHARAVSNG 552
              Y+QNG + EA+   K        PKPEL+AS++S+CGR  +L  R+G++IH   V +G
Sbjct: 140  NAYLQNGLLVEALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDG 199

Query: 553  EIN--QCTFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLD 726
             I      F STA +D Y +C DS  A  +F  M+ +NEVSWTA+I+GC  N+ Y ++L 
Sbjct: 200  RIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALA 259

Query: 727  LFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYC 906
             +R M VEG  PNRVTLIA+L ACA   ++K+GK+IHGYA R   +S    + ALI +YC
Sbjct: 260  CYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYC 319

Query: 907  KCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLL 1086
            +C  +   A  IFE S  RDVV+WSS+IGSY++ G+S  A+KLFN+MR E   PN +TLL
Sbjct: 320  ECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLL 379

Query: 1087 AIIIP----HSVNHGRAVHGYILKTGFGSDTYVGNSLIDMYAKCGHLN 1218
            A+I       S  HG  +HGYILK G G   +V N+LI+MYAKCG L+
Sbjct: 380  AVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLD 427



 Score =  164 bits (416), Expect = 3e-38
 Identities = 115/397 (28%), Positives = 192/397 (48%), Gaps = 13/397 (3%)
 Frame = +1

Query: 64   SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFL--HFGIQLHCMA 237
            S +   +  GL  +AL+   K+ +   F  K  +L S++  C     L    G Q+H + 
Sbjct: 137  SMINAYLQNGLLVEALQML-KDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLV 195

Query: 238  LKTGSVL---DIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVT 408
            +  G +     + ++ + +  Y +C  +  A  +FD M +++ V+W ++I+    N    
Sbjct: 196  VVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYD 255

Query: 409  EAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTAL 588
             A+  +++M    + P    + ++L+ C R G ++ GKEIH  A   G  + C   S AL
Sbjct: 256  VALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRG-FDSCHSFSPAL 314

Query: 589  IDMYSKCFDS-KAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPN 765
            I +Y +C  S   A +IF+    R+ V W+++I           +L LF  M  E   PN
Sbjct: 315  IYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPN 374

Query: 766  RVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIF 945
             VTL+AV+ AC  LS  KHG  IHGY ++        +  ALI+MY KC G+   +  IF
Sbjct: 375  YVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKC-GSLDDSRKIF 433

Query: 946  EASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIPHSVNH-GR 1122
                 RD V W+SMI +Y  +G    A++ F +M+  G+  +++T LA++   + NH G 
Sbjct: 434  LEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVL--SACNHAGL 491

Query: 1123 AVHGYILKTGFGSDTYVGNS------LIDMYAKCGHL 1215
               G  L     +D  +  +      LID++ + G L
Sbjct: 492  VTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKL 528



 Score =  120 bits (302), Expect = 5e-25
 Identities = 87/314 (27%), Positives = 152/314 (48%), Gaps = 4/314 (1%)
 Frame = +1

Query: 166  LPSVIKACSTAQFLHFGIQLHCMALKTGSVLDIVIANSLISMYAKCS-STETASQLFDAM 342
            L +++ AC+   F+ +G ++H  A + G       + +LI +Y +C  S   A ++F+  
Sbjct: 276  LIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGS 335

Query: 343  PIRDMVTWNSIITCYVQNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGK 522
             +RD+V W+SII  Y + G   +A+  F +M +    P    + +++S C    + + G 
Sbjct: 336  SLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGG 395

Query: 523  EIHARAVSNGEINQCTFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTN 702
             IH   +  G I    F   ALI+MY+KC     + +IF  M  R+ V+W +MI+    +
Sbjct: 396  VIHGYILKFG-IGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLH 454

Query: 703  ERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLA 882
                 +L  F  M   G + + VT +AVL AC     +  G+Q+    + + CE    + 
Sbjct: 455  GYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQ-VNADCEIPITIE 513

Query: 883  --AALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQM-RM 1053
              A LID++ +    + A  ++     +    +WSS++ S   +G    A  L +Q+ R 
Sbjct: 514  HYACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRS 573

Query: 1054 EGINPNSITLLAII 1095
            E  N  S TLL++I
Sbjct: 574  EPNNAASYTLLSMI 587



 Score = 96.7 bits (239), Expect = 1e-17
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 1/223 (0%)
 Frame = +1

Query: 64   SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFLHFGIQLHCMALK 243
            S + +   +G   +AL+ + K +   +    +  L +VI AC+       G  +H   LK
Sbjct: 345  SIIGSYARRGESDKALKLFNK-MRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILK 403

Query: 244  TGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAITK 423
             G    I + N+LI+MYAKC S + + ++F  MP RD VTWNS+I+ Y  +GY  +A+  
Sbjct: 404  FGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQH 463

Query: 424  FKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMYS 603
            F +M    +        ++LS C   G +  G+++  +  ++ EI         LID++ 
Sbjct: 464  FYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHG 523

Query: 604  KCFDSKAAYQIFQCMKQRNEVS-WTAMITGCTTNERYSISLDL 729
            +    + A +I + M  +     W+++++ C  + R  I+  L
Sbjct: 524  RSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESL 566


>gb|ABN05862.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 460

 Score =  371 bits (952), Expect = e-100
 Identities = 197/408 (48%), Positives = 264/408 (64%), Gaps = 9/408 (2%)
 Frame = +1

Query: 22   RFISNASSTLSLAISEVQNLVSKGLFQQALEFYRK-EVHPCQFHEKHFILPSVIKACSTA 198
            RF+S+   T S +   ++ LVS GL+ Q L+F+ +       F+   F+LPSVIKACS  
Sbjct: 21   RFLSSVVPTHSPS-DHIKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFT 79

Query: 199  QFLHFGIQLHCMALKTGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSII 378
             F  FG QLHC+A  TGS  D +++NS+ISMYAK    E+A Q+FD MP RD +TWNS+I
Sbjct: 80   HFHAFGTQLHCLAFITGSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMI 139

Query: 379  TCYVQNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNL--RLGKEIHARAVSNG 552
              Y+QNG + EA+   K        PKPEL+AS++S+CGR  +L  R+G++IH   V +G
Sbjct: 140  NAYLQNGLLVEALQMLKDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDG 199

Query: 553  EIN--QCTFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLD 726
             I      F STA +D Y +C DS  A  +F  M+ +NEVSWTA+I+GC  N+ Y ++L 
Sbjct: 200  RIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALA 259

Query: 727  LFRAMLVEGFRPNRVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYC 906
             +R M VEG  PNRVTLIA+L ACA   ++K+GK+IHGYA R   +S    + ALI +YC
Sbjct: 260  CYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYC 319

Query: 907  KCEGTQGAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLL 1086
            +C  +   A  IFE S  RDVV+WSS+IGSY++ G+S  A+KLFN+MR E   PN +TLL
Sbjct: 320  ECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLL 379

Query: 1087 AIIIP----HSVNHGRAVHGYILKTGFGSDTYVGNSLIDMYAKCGHLN 1218
            A+I       S  HG  +HGYILK G G   +V N+LI+MYAKCG L+
Sbjct: 380  AVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLD 427



 Score =  147 bits (371), Expect = 5e-33
 Identities = 97/322 (30%), Positives = 157/322 (48%), Gaps = 6/322 (1%)
 Frame = +1

Query: 64   SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFL--HFGIQLHCMA 237
            S +   +  GL  +AL+   K+ +   F  K  +L S++  C     L    G Q+H + 
Sbjct: 137  SMINAYLQNGLLVEALQML-KDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLV 195

Query: 238  LKTGSVL---DIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVT 408
            +  G +     + ++ + +  Y +C  +  A  +FD M +++ V+W ++I+    N    
Sbjct: 196  VVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYD 255

Query: 409  EAITKFKQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTAL 588
             A+  +++M    + P    + ++L+ C R G ++ GKEIH  A   G  + C   S AL
Sbjct: 256  VALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRG-FDSCHSFSPAL 314

Query: 589  IDMYSKCFDS-KAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPN 765
            I +Y +C  S   A +IF+    R+ V W+++I           +L LF  M  E   PN
Sbjct: 315  IYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPN 374

Query: 766  RVTLIAVLPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIF 945
             VTL+AV+ AC  LS  KHG  IHGY ++        +  ALI+MY KC G+   +  IF
Sbjct: 375  YVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKC-GSLDDSRKIF 433

Query: 946  EASQRRDVVMWSSMIGSYSKNG 1011
                 RD V W+SMI +Y  +G
Sbjct: 434  LEMPSRDSVTWNSMISAYGLHG 455



 Score = 70.5 bits (171), Expect = 8e-10
 Identities = 40/117 (34%), Positives = 63/117 (53%)
 Frame = +1

Query: 64  SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQFLHFGIQLHCMALK 243
           S + +   +G   +AL+ + K +   +    +  L +VI AC+       G  +H   LK
Sbjct: 345 SIIGSYARRGESDKALKLFNK-MRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILK 403

Query: 244 TGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEA 414
            G    I + N+LI+MYAKC S + + ++F  MP RD VTWNS+I+ Y  +GY  +A
Sbjct: 404 FGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460


>ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313151|gb|EFH43574.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 598

 Score =  344 bits (882), Expect = 3e-92
 Identities = 190/401 (47%), Positives = 260/401 (64%), Gaps = 9/401 (2%)
 Frame = +1

Query: 40   SSTLSLAI-SEVQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQ--FLH 210
            SS L+L + ++++ LVS  L  +AL  Y+  +HP   +    ILPSVIKACS  Q  FL 
Sbjct: 6    SSRLNLELGNKLKGLVSGQLHDEALRLYKLNIHPLGTNGFTAILPSVIKACSFQQEPFL- 64

Query: 211  FGIQLHCMALKTGSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYV 390
             G QLHC+  K+G+  D V++NSLISMYAK S    A ++FD M  RD V++ SI+ CY 
Sbjct: 65   LGAQLHCLCFKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYC 124

Query: 391  QNGYVTEAITKFKQMCSYSIHPKPELIASILSVCGRTGNL-RLGKEIHARAVSNGEINQC 567
            Q+G ++EA+   K+M  Y   PK EL+AS+L++C R G+  ++ + +HA  + +  I + 
Sbjct: 125  QDGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQES 184

Query: 568  TFTSTALIDMYSKCFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLV 747
               STAL+DMY K  D  AA+ +F  M+ +NEVSWTAMI+GC  N  Y + +D FRAM  
Sbjct: 185  VLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQR 244

Query: 748  EGFRPNRVTLIAVLPACAELSY-LKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQ 924
            E  RPNRVTL++VLPAC EL Y L+  K+IHG++ R    S+ +L AA + MYC+C G+ 
Sbjct: 245  ENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIAAFMTMYCRC-GSV 303

Query: 925  GAATLIFEASQRRDVVMWSSMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIII-- 1098
              + L+FE S+ RDVVMWSSMI  Y++NGD + A+ L +QMR EG  PNS+TLLA++   
Sbjct: 304  SLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSAC 363

Query: 1099 --PHSVNHGRAVHGYILKTGFGSDTYVGNSLIDMYAKCGHL 1215
                S+     VH  ILK GF S   + N+LIDMYAKCG L
Sbjct: 364  THSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSL 404



 Score =  149 bits (375), Expect = 2e-33
 Identities = 103/349 (29%), Positives = 173/349 (49%), Gaps = 3/349 (0%)
 Frame = +1

Query: 91   GLFQQALEFYRKEVHPCQFHEKHFILPSVIKACST-AQFLHFGIQLHCMALKTGSVLD-I 264
            GL  +A++   KE++   F  K  ++ S++  C+           LH + L    + + +
Sbjct: 127  GLLSEAMKLL-KEMYFYGFVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQESV 185

Query: 265  VIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAITKFKQMCSY 444
            +++ +L+ MY K      A  +FD M +++ V+W ++I+  V N      I  F+ M   
Sbjct: 186  LLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQRE 245

Query: 445  SIHPKPELIASILSVCGRTG-NLRLGKEIHARAVSNGEINQCTFTSTALIDMYSKCFDSK 621
            ++ P    + S+L  C   G  LRL KEIH  +  +G  +     + A + MY +C    
Sbjct: 246  NLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRLIA-AFMTMYCRCGSVS 304

Query: 622  AAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACA 801
             +  +F+  K R+ V W++MI+G   N   S +++L   M  EG  PN VTL+AV+ AC 
Sbjct: 305  LSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVVSACT 364

Query: 802  ELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRDVVMWS 981
              + LK    +H   ++    S   L+ ALIDMY KC G+  AA  +F     +D+V WS
Sbjct: 365  HSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKC-GSLPAAREVFYELNEKDLVSWS 423

Query: 982  SMIGSYSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIPHSVNHGRAV 1128
            SMI +Y  +G  + A+++F  M   G   + +  LA++   + NH   V
Sbjct: 424  SMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVL--SACNHAGLV 470



 Score =  124 bits (312), Expect = 4e-26
 Identities = 85/351 (24%), Positives = 164/351 (46%), Gaps = 3/351 (0%)
 Frame = +1

Query: 70   VQNLVSKGLFQQALEFYRKEVHPCQFHEKHFILPSVIKACSTAQF-LHFGIQLHCMALKT 246
            +   V+   ++  ++F+R              L SV+ AC    + L    ++H  + + 
Sbjct: 223  ISGCVANYNYEVGIDFFRAMQRE-NLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRH 281

Query: 247  GSVLDIVIANSLISMYAKCSSTETASQLFDAMPIRDMVTWNSIITCYVQNGYVTEAITKF 426
            G   D  +  + ++MY +C S   +  LF+   +RD+V W+S+I+ Y +NG  +EA+   
Sbjct: 282  GFHSDDRLIAAFMTMYCRCGSVSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLL 341

Query: 427  KQMCSYSIHPKPELIASILSVCGRTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMYSK 606
             QM      P    + +++S C  + +L++   +H++ +  G ++     S ALIDMY+K
Sbjct: 342  SQMRKEGSEPNSVTLLAVVSACTHSASLKIASTVHSQILKCGFMSHILL-SNALIDMYAK 400

Query: 607  CFDSKAAYQIFQCMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAV 786
            C    AA ++F  + +++ VSW++MI     +   S +L++F+ M+  G   + +  +AV
Sbjct: 401  CGSLPAAREVFYELNEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAV 460

Query: 787  LPACAELSYLKHGKQIHGYAIRSHCESESKLAAALIDMYCKCEGTQGAATLIFEASQRRD 966
            L AC     ++  + I   A + H     +  +  I++  +      A  +      +  
Sbjct: 461  LSACNHAGLVEEAQTIFTQAGKYHMPVTLEHYSCYINLLGRFGKIDDAFEVTINMPMKPS 520

Query: 967  VVMWSSMIGSYSKNG--DSANAIKLFNQMRMEGINPNSITLLAIIIPHSVN 1113
              +WSS++ +   +G  D A  I     M+ E  NP +  LL+ I   S N
Sbjct: 521  ARIWSSLLSACETHGRLDVACKIIANELMKSEPDNPANYVLLSKIHTESGN 571



 Score =  100 bits (248), Expect = 1e-18
 Identities = 71/260 (27%), Positives = 129/260 (49%), Gaps = 9/260 (3%)
 Frame = +1

Query: 466  LIASILSVCG-RTGNLRLGKEIHARAVSNGEINQCTFTSTALIDMYSKCFDSKAAYQIFQ 642
            ++ S++  C  +     LG ++H     +G  ++ T  S +LI MY+K   + AA ++F 
Sbjct: 48   ILPSVIKACSFQQEPFLLGAQLHCLCFKSGA-DRDTVVSNSLISMYAKLSRAYAARKVFD 106

Query: 643  CMKQRNEVSWTAMITGCTTNERYSISLDLFRAMLVEGFRPNRVTLIAVLPACAEL-SYLK 819
             M QR+ VS+ +++     +   S ++ L + M   GF P    + ++L  C  + S  K
Sbjct: 107  EMLQRDTVSYCSIVNCYCQDGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSK 166

Query: 820  HGKQIHGYAIRSHCESESKL-AAALIDMYCKCEGTQGAATLIFEASQRRDVVMWSSMIGS 996
              + +H   +      ES L + AL+DMY K +    AA  +F+  + ++ V W++MI  
Sbjct: 167  VARMLHALVLVDERIQESVLLSTALLDMYLKFDDP-AAAFHVFDQMELKNEVSWTAMISG 225

Query: 997  YSKNGDSANAIKLFNQMRMEGINPNSITLLAIIIPHSVNHG------RAVHGYILKTGFG 1158
               N +    I  F  M+ E + PN +TLL+++ P  V  G      + +HG+  + GF 
Sbjct: 226  CVANYNYEVGIDFFRAMQRENLRPNRVTLLSVL-PACVELGYGLRLVKEIHGFSFRHGFH 284

Query: 1159 SDTYVGNSLIDMYAKCGHLN 1218
            SD  +  + + MY +CG ++
Sbjct: 285  SDDRLIAAFMTMYCRCGSVS 304