BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028280
         (437 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containi...    82   4e-14
ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containi...    82   6e-14
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    80   1e-13
ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 45/117 (38%), Positives = 71/117 (60%)
 Frame = -1

Query: 353 VSTVLDMLRRKLSPKATFPLSKTTTQQHHLVLFIRLENLVRERCKSGNLTFDEALALFNR 174
           +S++ +   R +SP    P+S T     +     +LEN ++  CKSG++   EA ++FN 
Sbjct: 26  LSSLFEHPHRPISPG---PISLTKDTVSNAPDRGQLENFLKSNCKSGHIKRSEAFSVFNH 82

Query: 173 MIQARPNLPSVFPFNQLLGALVKMKQYSTVLDMYKTMTCAGVQPSVVTLNVLINCYC 3
           +I  +P  P +  FN LLGA+ K+K+Y  V+ +YK M+  G+ P  +TLN+LINCYC
Sbjct: 83  LIDMQPT-PPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILINCYC 138


>ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
           gi|449492643|ref|XP_004159059.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 45/104 (43%), Positives = 60/104 (57%)
 Frame = -1

Query: 314 PKATFPLSKTTTQQHHLVLFIRLENLVRERCKSGNLTFDEALALFNRMIQARPNLPSVFP 135
           PK+   LS+  + QH L +FI         CK GN+T  +AL  F+ M++      S+  
Sbjct: 47  PKSLHALSERISLQHGLPMFIH-------NCKKGNITSTQALQFFDLMMR------SIIS 93

Query: 134 FNQLLGALVKMKQYSTVLDMYKTMTCAGVQPSVVTLNVLINCYC 3
           FN LLGAL K+K YS V  +YK M  AG+ P+  TLN+LINC C
Sbjct: 94  FNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLC 137


>ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 46/110 (41%), Positives = 65/110 (59%), Gaps = 7/110 (6%)
 Frame = -1

Query: 311 KATFPLSKTTTQQHHLV----LFIRL---ENLVRERCKSGNLTFDEALALFNRMIQARPN 153
           KA    + TTT+  + +    +F+R          + KSG    D+A+ALF R+I   P 
Sbjct: 16  KAAMLYAATTTRLRYAISKFSVFLRFFSDSQKQNAKKKSGFDAIDDAVALFTRLITMHP- 74

Query: 152 LPSVFPFNQLLGALVKMKQYSTVLDMYKTMTCAGVQPSVVTLNVLINCYC 3
           LPSV  FN +LG++VKMK Y T + + K M   G+ PS+VTL++LINCYC
Sbjct: 75  LPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYC 124


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = -1

Query: 236 VRERCKSGNLT-FDEALALFNRMIQARPNLPSVFPFNQLLGALVKMKQYSTVLDMYKTMT 60
           VR++CK G+ + FD+ALA FN+M+   P  P +  FNQLL ALV+MK Y +V+ +Y+ M 
Sbjct: 73  VRDKCKGGSFSNFDDALAYFNQMVHMNP-FPCITQFNQLLAALVRMKHYDSVVSIYRKME 131

Query: 59  CAGVQPSVVTLNVLINCYC 3
             GV  SV TL +LINC C
Sbjct: 132 FFGVSCSVYTLTILINCLC 150


>ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 32/68 (47%), Positives = 47/68 (69%)
 Frame = -1

Query: 206 TFDEALALFNRMIQARPNLPSVFPFNQLLGALVKMKQYSTVLDMYKTMTCAGVQPSVVTL 27
           + D+A+ALF+RM+   P LPS+  F ++LG + KM+ Y+T +D+Y  M   GV P  VT 
Sbjct: 34  SIDDAVALFHRMVDMHP-LPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTF 92

Query: 26  NVLINCYC 3
           N+LINC+C
Sbjct: 93  NILINCFC 100