BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00028142
         (391 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_002312938.1| predicted protein [Populus trichocarpa] gi|2...   166   2e-39
dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]           164   9e-39
ref|NP_565402.1| pentatricopeptide repeat-containing protein [Ar...   164   9e-39
ref|NP_849962.1| pentatricopeptide repeat-containing protein [Ar...   164   9e-39

>ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
           [Vitis vinifera] gi|297744557|emb|CBI37819.3| unnamed
           protein product [Vitis vinifera]
          Length = 435

 Score =  172 bits (435), Expect = 3e-41
 Identities = 87/130 (66%), Positives = 99/130 (76%)
 Frame = -1

Query: 391 LQDPKTIPLSILELMEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYV 212
           LQD KT P +I ELME L+ DE +L++EL  S VL +L+EW   EGKLDLHGMHLG  Y+
Sbjct: 297 LQDLKTFPPTIDELMETLKGDEALLVKELIGSMVLAELMEWDCSEGKLDLHGMHLGSAYL 356

Query: 211 IMLQWIEELRSRFSDENSVIPAEIVVVCGLGKHSSVRGESPVKSLVLEMMVRLSSPMRID 32
           IMLQW EELR R +    V+P EI VVCG GKHSSVRGESPVK +V EMM R  SPM+ID
Sbjct: 357 IMLQWREELRYRLNAAEYVMPVEITVVCGSGKHSSVRGESPVKRMVREMMTRTRSPMKID 416

Query: 31  RKNIGCFVAK 2
           RKNIGCFVAK
Sbjct: 417 RKNIGCFVAK 426


>ref|XP_002312938.1| predicted protein [Populus trichocarpa] gi|222849346|gb|EEE86893.1|
           predicted protein [Populus trichocarpa]
          Length = 473

 Score =  166 bits (419), Expect = 2e-39
 Identities = 79/123 (64%), Positives = 99/123 (80%)
 Frame = -1

Query: 370 PLSILELMEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYVIMLQWIE 191
           P+SI EL++ L ++E +L++EL +SSVL +  +W + EGKLDLHGMHLG  YVIMLQW+E
Sbjct: 342 PVSIQELLKILSEEEAMLVKELIESSVLKEATKWDTSEGKLDLHGMHLGSAYVIMLQWME 401

Query: 190 ELRSRFSDENSVIPAEIVVVCGLGKHSSVRGESPVKSLVLEMMVRLSSPMRIDRKNIGCF 11
           E R+R SD   VIPAEI VVCG G HS+VRGESPVKS++ ++M +  SPMRIDRKNIGCF
Sbjct: 402 ETRNRLSDGEHVIPAEITVVCGSGNHSTVRGESPVKSMITQIMAQTRSPMRIDRKNIGCF 461

Query: 10  VAK 2
           VAK
Sbjct: 462 VAK 464


>dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]
          Length = 501

 Score =  164 bits (414), Expect = 9e-39
 Identities = 80/130 (61%), Positives = 103/130 (79%)
 Frame = -1

Query: 391 LQDPKTIPLSILELMEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYV 212
           L+D  + P+S+ EL   L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+
Sbjct: 362 LKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYL 421

Query: 211 IMLQWIEELRSRFSDENSVIPAEIVVVCGLGKHSSVRGESPVKSLVLEMMVRLSSPMRID 32
           I+LQW++E R RFS+E  VIPAEIVVV G GKHS+VRGESPVK+LV ++MVR  SPMRID
Sbjct: 422 ILLQWMDETRLRFSEEKCVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRID 481

Query: 31  RKNIGCFVAK 2
           RKN+G F+AK
Sbjct: 482 RKNVGSFIAK 491


>ref|NP_565402.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|13877877|gb|AAK44016.1|AF370201_1 unknown protein
           [Arabidopsis thaliana] gi|21280879|gb|AAM44931.1|
           unknown protein [Arabidopsis thaliana]
           gi|330251481|gb|AEC06575.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  164 bits (414), Expect = 9e-39
 Identities = 80/130 (61%), Positives = 103/130 (79%)
 Frame = -1

Query: 391 LQDPKTIPLSILELMEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYV 212
           L+D  + P+S+ EL   L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+
Sbjct: 365 LKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYL 424

Query: 211 IMLQWIEELRSRFSDENSVIPAEIVVVCGLGKHSSVRGESPVKSLVLEMMVRLSSPMRID 32
           I+LQW++E R RFS+E  VIPAEIVVV G GKHS+VRGESPVK+LV ++MVR  SPMRID
Sbjct: 425 ILLQWMDETRLRFSEEKCVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRID 484

Query: 31  RKNIGCFVAK 2
           RKN+G F+AK
Sbjct: 485 RKNVGSFIAK 494


>ref|NP_849962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75244359|sp|Q8GWA9.1|PP157_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g17033 gi|26452937|dbj|BAC43545.1| unknown protein
           [Arabidopsis thaliana] gi|330251482|gb|AEC06576.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 505

 Score =  164 bits (414), Expect = 9e-39
 Identities = 80/130 (61%), Positives = 103/130 (79%)
 Frame = -1

Query: 391 LQDPKTIPLSILELMEELQKDEIVLIQELKDSSVLVDLLEWSSMEGKLDLHGMHLGCVYV 212
           L+D  + P+S+ EL   L +DE +L+ EL  SSVL + +EW+++EGKLDLHGMHL   Y+
Sbjct: 366 LKDLDSCPVSLSELRTFLNEDEALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYL 425

Query: 211 IMLQWIEELRSRFSDENSVIPAEIVVVCGLGKHSSVRGESPVKSLVLEMMVRLSSPMRID 32
           I+LQW++E R RFS+E  VIPAEIVVV G GKHS+VRGESPVK+LV ++MVR  SPMRID
Sbjct: 426 ILLQWMDETRLRFSEEKCVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRTGSPMRID 485

Query: 31  RKNIGCFVAK 2
           RKN+G F+AK
Sbjct: 486 RKNVGSFIAK 495