BLASTX nr result
ID: Coptis24_contig00028088
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028088
(293 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,... 154 7e-36
emb|CBI30945.3| unnamed protein product [Vitis vinifera] 151 5e-35
ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi... 151 5e-35
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera] 151 5e-35
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ... 149 2e-34
>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 737
Score = 154 bits (389), Expect = 7e-36
Identities = 71/97 (73%), Positives = 85/97 (87%)
Frame = +2
Query: 2 EKMVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQ 181
EKMVKD L PDQVTYNT++ LSKHGH DEA +FLRE+EE+GF+VDKVGYSAIV+SF
Sbjct: 300 EKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCM 359
Query: 182 QGNLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCRIG 292
QG +D+AKEIV+EM++KGC PDVVTYTAVVNG C++G
Sbjct: 360 QGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVG 396
Score = 56.6 bits (135), Expect = 2e-06
Identities = 25/85 (29%), Positives = 49/85 (57%)
Frame = +2
Query: 32 PDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEI 211
P+ +TY+ ++ L + G EA +RE KGF V + ++ S + +++AK+
Sbjct: 450 PNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKF 509
Query: 212 VSEMLSKGCKPDVVTYTAVVNGYCR 286
+ E L++GC + V +T V++G+C+
Sbjct: 510 MEECLNRGCAVNAVNFTTVIHGFCQ 534
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/84 (29%), Positives = 46/84 (54%)
Frame = +2
Query: 32 PDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEI 211
P+ V+Y ++ L +HG+ EA + + SEE + + + YS ++ ++G L +A ++
Sbjct: 415 PNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDV 474
Query: 212 VSEMLSKGCKPDVVTYTAVVNGYC 283
V EML+KG P V ++ C
Sbjct: 475 VREMLTKGFFPTPVEINLLIKSLC 498
Score = 54.7 bits (130), Expect = 8e-06
Identities = 27/87 (31%), Positives = 50/87 (57%)
Frame = +2
Query: 32 PDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEI 211
PD VTY ++ L K G +EA + L++ + G + + V Y+A+++ Q GN +A+E+
Sbjct: 380 PDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREM 439
Query: 212 VSEMLSKGCKPDVVTYTAVVNGYCRIG 292
++ P+ +TY+ V++G R G
Sbjct: 440 MNTSEEDWWTPNAITYSVVMHGLRREG 466
>emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 151 bits (382), Expect = 5e-35
Identities = 71/95 (74%), Positives = 84/95 (88%)
Frame = +2
Query: 2 EKMVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQ 181
EKM+KD+NLLPDQVTYNT + LSKHGHGDEA +FLRE+EE+ FRVDKVGYSAIV SF +
Sbjct: 361 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 420
Query: 182 QGNLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCR 286
+G +DKAKEIV+EM SKGC PDVVTYT+V+NG C+
Sbjct: 421 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 455
Score = 62.0 bits (149), Expect = 5e-08
Identities = 26/86 (30%), Positives = 50/86 (58%)
Frame = +2
Query: 29 LPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKE 208
+P+ +TY+ ++ + G EA +RE +KGF V + ++ S Q+ +D+AK
Sbjct: 510 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKR 569
Query: 209 IVSEMLSKGCKPDVVTYTAVVNGYCR 286
+ + L+ GC +VV +T V++G+C+
Sbjct: 570 FMEQCLNNGCAVNVVNFTTVIHGFCQ 595
>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 151 bits (382), Expect = 5e-35
Identities = 71/95 (74%), Positives = 84/95 (88%)
Frame = +2
Query: 2 EKMVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQ 181
EKM+KD+NLLPDQVTYNT + LSKHGHGDEA +FLRE+EE+ FRVDKVGYSAIV SF +
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 182 QGNLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCR 286
+G +DKAKEIV+EM SKGC PDVVTYT+V+NG C+
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 392
Score = 62.0 bits (149), Expect = 5e-08
Identities = 26/86 (30%), Positives = 50/86 (58%)
Frame = +2
Query: 29 LPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKE 208
+P+ +TY+ ++ + G EA +RE +KGF V + ++ S Q+ +D+AK
Sbjct: 447 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKR 506
Query: 209 IVSEMLSKGCKPDVVTYTAVVNGYCR 286
+ + L+ GC +VV +T V++G+C+
Sbjct: 507 FMEQCLNNGCAVNVVNFTTVIHGFCQ 532
>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 151 bits (382), Expect = 5e-35
Identities = 71/95 (74%), Positives = 84/95 (88%)
Frame = +2
Query: 2 EKMVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQ 181
EKM+KD+NLLPDQVTYNT + LSKHGHGDEA +FLRE+EE+ FRVDKVGYSAIV SF +
Sbjct: 298 EKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCR 357
Query: 182 QGNLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCR 286
+G +DKAKEIV+EM SKGC PDVVTYT+V+NG C+
Sbjct: 358 EGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQ 392
Score = 62.0 bits (149), Expect = 5e-08
Identities = 26/86 (30%), Positives = 50/86 (58%)
Frame = +2
Query: 29 LPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKE 208
+P+ +TY+ ++ + G EA +RE +KGF V + ++ S Q+ +D+AK
Sbjct: 447 IPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKR 506
Query: 209 IVSEMLSKGCKPDVVTYTAVVNGYCR 286
+ + L+ GC +VV +T V++G+C+
Sbjct: 507 FMEQCLNNGCAVNVVNFTTVIHGFCQ 532
>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 790
Score = 149 bits (376), Expect = 2e-34
Identities = 66/97 (68%), Positives = 84/97 (86%)
Frame = +2
Query: 2 EKMVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQ 181
E MV+++NL+PDQVTYNT+I ALSKHGH D+A FLRE+EEKGF +DKVGYSA+VDSF +
Sbjct: 361 ENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCK 420
Query: 182 QGNLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCRIG 292
N+DKAK +V +M SKGC PDVVTYTA+++G+CR+G
Sbjct: 421 NKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVG 457
Score = 64.7 bits (156), Expect = 8e-09
Identities = 31/87 (35%), Positives = 51/87 (58%)
Frame = +2
Query: 32 PDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEI 211
P+ +TY+ ++ L + G EA RE EKGF + V + ++ S + N+ AK+
Sbjct: 511 PNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLPNPVDINLLIQSLCRNQNVVGAKKY 570
Query: 212 VSEMLSKGCKPDVVTYTAVVNGYCRIG 292
+ E L KGC +VV +T+V+ G+C+IG
Sbjct: 571 LEECLHKGCAVNVVNFTSVIYGFCQIG 597
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/93 (31%), Positives = 48/93 (51%)
Frame = +2
Query: 8 MVKDANLLPDQVTYNTIILALSKHGHGDEAHQFLRESEEKGFRVDKVGYSAIVDSFSQQG 187
+++ A + PD NT I L K ++A +FL + G D V Y+ ++ +
Sbjct: 257 LMQKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVH 316
Query: 188 NLDKAKEIVSEMLSKGCKPDVVTYTAVVNGYCR 286
+D A E+++EM KGC PD V+Y V+ C+
Sbjct: 317 RIDDALELIAEMPFKGCPPDKVSYYTVMAFLCK 349