BLASTX nr result
ID: Coptis24_contig00028014
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00028014
(306 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi... 181 5e-44
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera] 180 1e-43
ref|XP_002528570.1| pentatricopeptide repeat-containing protein,... 168 4e-40
ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|2... 163 1e-38
gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japo... 156 1e-36
>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 181 bits (459), Expect = 5e-44
Identities = 84/101 (83%), Positives = 93/101 (92%)
Frame = +2
Query: 2 TSIIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLR 181
TS+IACC+QNG DIEALELFREMQ+AGVKPNSVTIPCLLPAC NIAALMHGKAAHC+SLR
Sbjct: 355 TSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLR 414
Query: 182 RGFSHNVYVGSSLVDMYAKCGKIVDSRNCFDRLPTKNLVCW 304
RG S +VYVGS+L+DMYAKCG+I SR CFD +PTKNLVCW
Sbjct: 415 RGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCW 455
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = +2
Query: 47 ALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRGFSHNVYVGSSLVD 226
AL F +M G+ P++ +P + AC+ ++AL + H + GF + +V SSLV
Sbjct: 98 ALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVH 157
Query: 227 MYAKCGKIVDSRNCFDRLPTKNLVCW 304
MY KC +I D+ FDR+ ++V W
Sbjct: 158 MYIKCNQIRDAHRVFDRMFEPDVVSW 183
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +2
Query: 8 IIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRG 187
+IA +G EA+ +F +M L G +P+ TI +LPA ++ L+ G H Y +++G
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280
Query: 188 FSHNVYVGSSLVDMYAKCGKIVDSRNCFDRL 280
+ V S+L+DMY KC + FD++
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQM 311
>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 180 bits (456), Expect = 1e-43
Identities = 83/101 (82%), Positives = 93/101 (92%)
Frame = +2
Query: 2 TSIIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLR 181
TS+IACC+QNG D+EALELFREMQ+AGVKPNSVTIPCLLPAC NIAALMHGKAAHC+SLR
Sbjct: 355 TSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLR 414
Query: 182 RGFSHNVYVGSSLVDMYAKCGKIVDSRNCFDRLPTKNLVCW 304
RG S +VYVGS+L+DMYAKCG+I SR CFD +PTKNLVCW
Sbjct: 415 RGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCW 455
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/86 (34%), Positives = 48/86 (55%)
Frame = +2
Query: 47 ALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRGFSHNVYVGSSLVD 226
AL F +M G+ P++ +P + AC+ ++AL + H + GF + +V SSLV
Sbjct: 98 ALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVH 157
Query: 227 MYAKCGKIVDSRNCFDRLPTKNLVCW 304
MY KC +I D+ FDR+ ++V W
Sbjct: 158 MYIKCNQIRDAHRVFDRMFEPDVVSW 183
Score = 57.0 bits (136), Expect = 2e-06
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +2
Query: 8 IIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRG 187
+IA +G EA+ +F +M L G +P+ TI +LPA ++ L+ G H Y +++G
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280
Query: 188 FSHNVYVGSSLVDMYAKCGKIVDSRNCFDRL 280
+ V S+L+DMY KC + FD++
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQM 311
>ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532014|gb|EEF33825.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 542
Score = 168 bits (426), Expect = 4e-40
Identities = 80/101 (79%), Positives = 89/101 (88%)
Frame = +2
Query: 2 TSIIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLR 181
TSIIA C+QNG DIEALELFREMQ+ GVKPN+VTIPCLLPAC NIAALMHGKAAHC+SL+
Sbjct: 344 TSIIASCSQNGKDIEALELFREMQVVGVKPNAVTIPCLLPACGNIAALMHGKAAHCFSLK 403
Query: 182 RGFSHNVYVGSSLVDMYAKCGKIVDSRNCFDRLPTKNLVCW 304
G S NVYVGS+LVDMYAKCG+I SR CFD +PT+NLV W
Sbjct: 404 SGISSNVYVGSALVDMYAKCGRIHISRLCFDIMPTRNLVSW 444
>ref|XP_002301973.1| predicted protein [Populus trichocarpa] gi|222843699|gb|EEE81246.1|
predicted protein [Populus trichocarpa]
Length = 716
Score = 163 bits (413), Expect = 1e-38
Identities = 74/101 (73%), Positives = 89/101 (88%)
Frame = +2
Query: 2 TSIIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLR 181
TS+IA C+QNG D+EALELFREMQ+ GVKPNSVTIPCLLPAC NIAAL+HGKAAHC+SLR
Sbjct: 313 TSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLR 372
Query: 182 RGFSHNVYVGSSLVDMYAKCGKIVDSRNCFDRLPTKNLVCW 304
G ++VYVGS+L+DMYAKCG+++ SR CFD +P +NLV W
Sbjct: 373 NGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSW 413
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/83 (34%), Positives = 48/83 (57%)
Frame = +2
Query: 50 LELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRGFSHNVYVGSSLVDM 229
+ +F M G+ P+S +P ++ C+ ++AL GK HC++L G + V SSL+ M
Sbjct: 59 IRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHM 118
Query: 230 YAKCGKIVDSRNCFDRLPTKNLV 298
Y + + D+RN FD+LP +V
Sbjct: 119 YVQFDHLKDARNVFDKLPQPGVV 141
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/91 (28%), Positives = 53/91 (58%)
Frame = +2
Query: 8 IIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLRRG 187
+I+ ++G ++A+ +F+ M L G+KP+ ++ +LPA ++ + G HCY +++G
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG 240
Query: 188 FSHNVYVGSSLVDMYAKCGKIVDSRNCFDRL 280
+ +V S+L+DMY KC + F+ +
Sbjct: 241 LGPDKFVVSALIDMYGKCACASEMSGVFNEM 271
>gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 156 bits (395), Expect = 1e-36
Identities = 67/101 (66%), Positives = 89/101 (88%)
Frame = +2
Query: 2 TSIIACCTQNG*DIEALELFREMQLAGVKPNSVTIPCLLPACSNIAALMHGKAAHCYSLR 181
TSI+ACC QNG D+EA++LFREMQ G++PNSVTIPC+LPA +NIAALMHG++AHC+SLR
Sbjct: 261 TSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLR 320
Query: 182 RGFSHNVYVGSSLVDMYAKCGKIVDSRNCFDRLPTKNLVCW 304
+GF H++YVGS+LVDMYAKCG++ D+R F+ +P +N+V W
Sbjct: 321 KGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSW 361