BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027861
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygr...    64   2e-08
ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containi...    62   5e-08
ref|XP_003623821.1| Pentatricopeptide repeat-containing protein ...    62   6e-08
emb|CBI26264.3| unnamed protein product [Vitis vinifera]               62   6e-08

>ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = -1

Query: 372 DASMVRTVIKNMSLTKKPGNSWIQVGTCVRVFHSKDRIHTENKEIQEILDCLLLELKYEG 193
           D S VR++IK+  L KKPG+SWIQVG C+ VFH+    H    +I+E L+ LLL +K E 
Sbjct: 656 DMSKVRSMIKDKGLEKKPGSSWIQVGHCIYVFHATSAFHPAFAKIEETLNSLLLVMKSED 715

Query: 192 YL 187
           Y+
Sbjct: 716 YM 717


>gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/72 (44%), Positives = 44/72 (61%)
 Frame = -1

Query: 372 DASMVRTVIKNMSLTKKPGNSWIQVGTCVRVFHSKDRIHTENKEIQEILDCLLLELKYEG 193
           DA  VR V++   + K+PG SWI+V   V VFH +D+ H E KEI   L  L  ++K +G
Sbjct: 620 DAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQG 679

Query: 192 YLPDIIFSLDDL 157
           Y+PD  F L D+
Sbjct: 680 YVPDTRFVLHDV 691


>ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 28/72 (38%), Positives = 47/72 (65%)
 Frame = -1

Query: 372 DASMVRTVIKNMSLTKKPGNSWIQVGTCVRVFHSKDRIHTENKEIQEILDCLLLELKYEG 193
           DA+ +R ++K+  +TK+PG SWI++ + +  F S+DR H    EI   +D ++  +K  G
Sbjct: 701 DAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRRIKEVG 760

Query: 192 YLPDIIFSLDDL 157
           Y+PD+ FSL D+
Sbjct: 761 YVPDMNFSLHDM 772


>ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355498836|gb|AES80039.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 837

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 27/72 (37%), Positives = 45/72 (62%)
 Frame = -1

Query: 372 DASMVRTVIKNMSLTKKPGNSWIQVGTCVRVFHSKDRIHTENKEIQEILDCLLLELKYEG 193
           D + +R ++K+  + K+PG SW+++ + V  F S DR H    EI   +D ++L +K  G
Sbjct: 686 DVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAG 745

Query: 192 YLPDIIFSLDDL 157
           Y+PD+ FSL D+
Sbjct: 746 YVPDMSFSLHDM 757


>emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/72 (43%), Positives = 44/72 (61%)
 Frame = -1

Query: 372 DASMVRTVIKNMSLTKKPGNSWIQVGTCVRVFHSKDRIHTENKEIQEILDCLLLELKYEG 193
           +A++VR  +K++ + K  G SWI  G  V VF +KD  H  N EIQ +L  L  E++  G
Sbjct: 432 EATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAG 491

Query: 192 YLPDIIFSLDDL 157
           Y+PD  F+L DL
Sbjct: 492 YIPDTSFALFDL 503