BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027560
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95797.1| retrotransposon protein, putative, unclassified [...   216   2e-54
emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]        209   1e-52
emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]         209   2e-52
gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]    209   2e-52
gb|ABA95230.1| retrotransposon protein, putative, unclassified [...   209   2e-52

>gb|ABA95797.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1588

 Score =  216 bits (549), Expect = 2e-54
 Identities = 104/153 (67%), Positives = 119/153 (77%), Gaps = 1/153 (0%)
 Frame = -2

Query: 466  ELHALEVNNTWVLVSLPPGRRAVGCKWVFTVKQNPDGTVSRYKARLVAKGYAQIHGVDYQ 287
            EL ALE N TW LV LP G+RAVGCKWVFTVKQ P+G V RYKARLVAKGY+Q +G+DY 
Sbjct: 1098 ELRALEKNKTWELVKLPMGKRAVGCKWVFTVKQTPEGKVDRYKARLVAKGYSQTYGIDYD 1157

Query: 286  ETFAPVAKMNTIRVIFSLAASKSWPLFQMDVKNAFLNGALQEEVYMSSPPGF-RSSTSGL 110
            ETFAPVAKM+T+R++ S A +  WPL Q+DVKNAFL+G LQEEVYM  PPGF  S T G 
Sbjct: 1158 ETFAPVAKMSTVRILISCAVNFGWPLHQLDVKNAFLHGDLQEEVYMEIPPGFGNSQTVGK 1217

Query: 109  VCRLKKSIYGLKQSPRTWAETFATAMTAYGYVQ 11
            VCRLKKS+YGLKQSPR W + F  A+   GY Q
Sbjct: 1218 VCRLKKSLYGLKQSPRAWFDRFRRALCNMGYSQ 1250


>emb|CAE75905.1| OSJNBa0088I22.18 [Oryza sativa Japonica Group]
          Length = 624

 Score =  209 bits (533), Expect = 1e-52
 Identities = 101/153 (66%), Positives = 117/153 (76%), Gaps = 1/153 (0%)
 Frame = -2

Query: 466 ELHALEVNNTWVLVSLPPGRRAVGCKWVFTVKQNPDGTVSRYKARLVAKGYAQIHGVDYQ 287
           EL ALE N TW LV  P G++ V CKWV+TVKQNPDG V RYKARLVAKGY+Q +G+DY 
Sbjct: 399 ELEALEKNKTWDLVPFPKGKKVVNCKWVYTVKQNPDGNVERYKARLVAKGYSQTYGIDYD 458

Query: 286 ETFAPVAKMNTIRVIFSLAASKSWPLFQMDVKNAFLNGALQEEVYMSSPPGFRSS-TSGL 110
           ETFAPVAK++T+R + S AA+  WPL Q+DVKNAFL+G LQEEVYM  PPGF +S T G 
Sbjct: 459 ETFAPVAKISTVRTLISCAANFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATSQTEGK 518

Query: 109 VCRLKKSIYGLKQSPRTWAETFATAMTAYGYVQ 11
           V RLKKS+YGLKQSPR W + F  AM   GY Q
Sbjct: 519 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQ 551


>emb|CAD41085.2| OSJNBb0011N17.2 [Oryza sativa Japonica Group]
          Length = 1262

 Score =  209 bits (532), Expect = 2e-52
 Identities = 102/153 (66%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
 Frame = -2

Query: 466  ELHALEVNNTWVLVSLPPGRRAVGCKWVFTVKQNPDGTVSRYKARLVAKGYAQIHGVDYQ 287
            EL ALE N TW LVS P G++ V CKWV+ VKQNPDG V RYKARLVAKGY+Q +G+DY 
Sbjct: 772  ELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGIDYD 831

Query: 286  ETFAPVAKMNTIRVIFSLAASKSWPLFQMDVKNAFLNGALQEEVYMSSPPGFRS-STSGL 110
            ETFAPVAKM+T+R I S A +  WPL Q+DVKNAFL+G LQEEVYM  PPGF +  T G 
Sbjct: 832  ETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTKGK 891

Query: 109  VCRLKKSIYGLKQSPRTWAETFATAMTAYGYVQ 11
            V RLKKS+YGLKQSPR W + F  AM A GY Q
Sbjct: 892  VLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQ 924


>gb|AAL68641.1|AF458765_1 polyprotein [Oryza sativa Japonica Group]
          Length = 1472

 Score =  209 bits (532), Expect = 2e-52
 Identities = 102/153 (66%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
 Frame = -2

Query: 466  ELHALEVNNTWVLVSLPPGRRAVGCKWVFTVKQNPDGTVSRYKARLVAKGYAQIHGVDYQ 287
            EL ALE N TW LVS P G++ V CKWV+ VKQNPDG V RYKARLVAKGY+Q +G+DY 
Sbjct: 982  ELEALEKNKTWDLVSYPNGKKVVNCKWVYAVKQNPDGKVERYKARLVAKGYSQTYGIDYD 1041

Query: 286  ETFAPVAKMNTIRVIFSLAASKSWPLFQMDVKNAFLNGALQEEVYMSSPPGFRS-STSGL 110
            ETFAPVAKM+T+R I S A +  WPL Q+DVKNAFL+G LQEEVYM  PPGF +  T G 
Sbjct: 1042 ETFAPVAKMSTVRTIISCAVNFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATLQTKGK 1101

Query: 109  VCRLKKSIYGLKQSPRTWAETFATAMTAYGYVQ 11
            V RLKKS+YGLKQSPR W + F  AM A GY Q
Sbjct: 1102 VLRLKKSLYGLKQSPRAWFDRFRRAMCAMGYKQ 1134


>gb|ABA95230.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 936

 Score =  209 bits (531), Expect = 2e-52
 Identities = 101/153 (66%), Positives = 116/153 (75%), Gaps = 1/153 (0%)
 Frame = -2

Query: 466 ELHALEVNNTWVLVSLPPGRRAVGCKWVFTVKQNPDGTVSRYKARLVAKGYAQIHGVDYQ 287
           EL ALE N TW LV  P G++ V CKWV+TVKQNPDG V RYKARLVAKGY+Q +G+DY 
Sbjct: 446 ELEALEKNKTWDLVPFPKGKKVVNCKWVYTVKQNPDGNVERYKARLVAKGYSQTYGIDYD 505

Query: 286 ETFAPVAKMNTIRVIFSLAASKSWPLFQMDVKNAFLNGALQEEVYMSSPPGFRSS-TSGL 110
           ETFAPVAKM+ +R + S AA+  WPL Q+DVKNAFL+G LQEEVYM  PPGF +S T G 
Sbjct: 506 ETFAPVAKMSMVRTLISCAANFDWPLHQLDVKNAFLHGDLQEEVYMEIPPGFATSQTEGK 565

Query: 109 VCRLKKSIYGLKQSPRTWAETFATAMTAYGYVQ 11
           V RLKKS+YGLKQSPR W + F  AM   GY Q
Sbjct: 566 VLRLKKSLYGLKQSPRAWFDRFRRAMCGMGYKQ 598