BLASTX nr result

ID: Coptis24_contig00027497 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027497
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|2...    50   2e-06
ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicag...    49   4e-06

>ref|XP_002325490.1| predicted protein [Populus trichocarpa] gi|222862365|gb|EEE99871.1|
           predicted protein [Populus trichocarpa]
          Length = 594

 Score = 50.1 bits (118), Expect(2) = 2e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = +3

Query: 186 GRVKEDFMIKKLHLGHLATSFGLKKQPSLVG 278
           G +K  FM+KKLHLGH++ SFGLK+QPSLVG
Sbjct: 533 GDLKRIFMVKKLHLGHVSRSFGLKQQPSLVG 563



 Score = 26.2 bits (56), Expect(2) = 2e-06
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 136 LYKTPF*SCV*AYIAHWGELKRI 204
           L +T F S V AY AH G+LKRI
Sbjct: 516 LAQTAFCSWVRAYTAHRGDLKRI 538


>ref|XP_003606390.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
           gi|355507445|gb|AES88587.1| DEAD-box ATP-dependent RNA
           helicase [Medicago truncatula]
          Length = 613

 Score = 48.9 bits (115), Expect(2) = 4e-06
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 186 GRVKEDFMIKKLHLGHLATSFGLKKQPSLVG 278
           G +K  FM+KKLHLGH+A SFGLK+ PSLVG
Sbjct: 553 GELKRIFMVKKLHLGHVAKSFGLKQIPSLVG 583



 Score = 26.6 bits (57), Expect(2) = 4e-06
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +1

Query: 136 LYKTPF*SCV*AYIAHWGELKRI 204
           L K  F S V AY AH GELKRI
Sbjct: 536 LAKRAFCSWVRAYTAHRGELKRI 558


Top