BLASTX nr result

ID: Coptis24_contig00027356 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027356
         (466 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329042.1| predicted protein [Populus trichocarpa] gi|2...   108   3e-31
ref|XP_002534679.1| conserved hypothetical protein [Ricinus comm...    97   9e-19
ref|XP_002514475.1| conserved hypothetical protein [Ricinus comm...    96   3e-18
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]               60   1e-11
ref|XP_002528720.1| conserved hypothetical protein [Ricinus comm...    74   2e-11

>ref|XP_002329042.1| predicted protein [Populus trichocarpa] gi|222839713|gb|EEE78036.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  108 bits (269), Expect(2) = 3e-31
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 3/87 (3%)
 Frame = +3

Query: 9   VEEIVEFKEIPDHKQVPLMVTRFKGRASAWYQQVKSTRSHQGKQKIESWDKLKKHMRAAF 188
           V+E++EFK++P+ ++V L+ TR +GRA AW+QQVK TR+ QGK KI  WDK+KK+MR+AF
Sbjct: 110 VDEVLEFKQVPEDRRVALVATRLRGRAGAWWQQVKKTRTLQGKGKITCWDKMKKNMRSAF 169

Query: 189 LPYHYKRYLCNR---LHQGFRSTDDYT 260
           LPY+Y R L  R   L QG RS DDYT
Sbjct: 170 LPYNYTRTLYQRLQNLRQGNRSVDDYT 196



 Score = 52.0 bits (123), Expect(2) = 3e-31
 Identities = 28/56 (50%), Positives = 35/56 (62%)
 Frame = +2

Query: 269 QLVVHADLMEGDEQLVHHYIGGLQQNFKDTLNLFDPWTVPKAHQRALCLENQLTRR 436
           QLV    + E +E  V  YIG L+  F+D LN+FD  +V  AHQRA+ LE QL RR
Sbjct: 201 QLVSRDAIAEDEESRVVRYIGRLRIQFQDVLNMFDVLSVSDAHQRAVQLEKQLVRR 256


>ref|XP_002534679.1| conserved hypothetical protein [Ricinus communis]
           gi|223524777|gb|EEF27704.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 272

 Score = 97.1 bits (240), Expect(2) = 9e-19
 Identities = 45/88 (51%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
 Frame = +3

Query: 6   LVEEIVEFKEIPDHKQVPLMVTRFKGRASAWYQQVKSTRSHQGKQKIESWDKLKKHMRAA 185
           +VEEI++FK +P+ K+VPL+ TR + RA+AW+QQ K TR+  GK KI + +K++KHM++ 
Sbjct: 77  MVEEILDFKWVPEDKRVPLVATRLRDRATAWWQQSKLTRTRLGKDKIATSEKMRKHMQSI 136

Query: 186 FLPYHYKRYLCNR---LHQGFRSTDDYT 260
           FLPY+++R +  R   L QG RS DDYT
Sbjct: 137 FLPYNFQRLMYQRLQNLRQGVRSVDDYT 164



 Score = 21.2 bits (43), Expect(2) = 9e-19
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 269 QLVVHADLMEGDEQLVHHYIGG 334
           QL+   D+ E  +QLV  + GG
Sbjct: 169 QLIARNDIQEAADQLVASWGGG 190


>ref|XP_002514475.1| conserved hypothetical protein [Ricinus communis]
           gi|223546374|gb|EEF47875.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 173

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 46/88 (52%), Positives = 65/88 (73%), Gaps = 3/88 (3%)
 Frame = +3

Query: 6   LVEEIVEFKEIPDHKQVPLMVTRFKGRASAWYQQVKSTRSHQGKQKIESWDKLKKHMRAA 185
           +VEEI++FK + + K+VPL+ TR +GRA+AW+QQ K TR+   K KI + +K+KKHMR+A
Sbjct: 74  MVEEILDFKGVLEDKRVPLVATRLRGRATAWWQQSKLTRARLEKDKIATLEKMKKHMRSA 133

Query: 186 FLPYHYKRYLCNR---LHQGFRSTDDYT 260
           FLPY+++R +  R   L QG R  DDYT
Sbjct: 134 FLPYNFQRLMYQRLQNLRQGMRLMDDYT 161


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score = 60.5 bits (145), Expect(2) = 1e-11
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = +3

Query: 9   VEEIVEFKEIPDHKQVPLMVTRFKGRASAWYQQVKSTRSHQGKQKIESWDKLKKHMRAAF 188
           +E +   ++  +  +V +  T F+  A +W+ Q+ +TR   G   IESW ++K  MR  F
Sbjct: 460 IELVFNCQQYTEESKVKVAPTEFQNYALSWWDQLVTTRRRAGDYPIESWTQMKTIMRKRF 519

Query: 189 LPYHYKRYLCNRLH---QGFRSTDDYTK 263
           +P HY R L NRL    QG +S ++Y K
Sbjct: 520 VPSHYYRELHNRLRNLVQGNKSVEEYYK 547



 Score = 33.5 bits (75), Expect(2) = 1e-11
 Identities = 16/59 (27%), Positives = 33/59 (55%)
 Frame = +2

Query: 260 KVNQLVVHADLMEGDEQLVHHYIGGLQQNFKDTLNLFDPWTVPKAHQRALCLENQLTRR 436
           ++  L++ AD+ E +E ++  ++GGL ++  D L +     + +   +A+  E QL RR
Sbjct: 548 EMETLMLRADIQEDNEAIMSRFMGGLNRDIIDRLEVQHYVELEELLHKAIMFEKQLKRR 606


>ref|XP_002528720.1| conserved hypothetical protein [Ricinus communis]
           gi|223531814|gb|EEF33632.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 124

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 33/56 (58%), Positives = 43/56 (76%)
 Frame = +3

Query: 9   VEEIVEFKEIPDHKQVPLMVTRFKGRASAWYQQVKSTRSHQGKQKIESWDKLKKHM 176
           VEEI++FK + + K VPL+ TR KGRA AW+QQ K TR+  GK KI +W+K+KKHM
Sbjct: 69  VEEILDFKGVQEDKCVPLVATRLKGRAIAWWQQSKLTRTRLGKDKIATWEKMKKHM 124


Top