BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027324
         (768 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003612651.1| Replication factor A protein [Medicago trunc...    59   1e-06
ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicag...    59   1e-06
ref|XP_002872320.1| hypothetical protein ARALYDRAFT_351828 [Arab...    57   4e-06

>ref|XP_003612651.1| Replication factor A protein [Medicago truncatula]
           gi|355513986|gb|AES95609.1| Replication factor A protein
           [Medicago truncatula]
          Length = 477

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
 Frame = +1

Query: 4   MGLDESYKGET-YTCRATIGYIFNTNWYYXXXXXXXXXXXV---VDRVCPDCGVEVGSRS 171
           M +   Y+G+  Y C AT+  I   N  Y                D  C  C  +V    
Sbjct: 267 MAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPK 326

Query: 172 ERYMLRMDVEDPSGVTLFVAFDREAEYLIQKPVTELVDSYKKENGPQA-VQTALEQVAGK 348
            RY L + V D +  T+FV F   AE L Q  + +L    + + G  + +   L+ + G 
Sbjct: 327 IRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGS 386

Query: 349 EFIFQVKINYYSQNKENQSFVIYKIFPTTV 438
           + IFQVK++ Y + +  QSF  +KI    V
Sbjct: 387 KHIFQVKLSSYFERRGVQSFTAHKILKPVV 416


>ref|XP_003606911.1| Replication factor A 51 kDa subunit [Medicago truncatula]
           gi|357477581|ref|XP_003609076.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|357477673|ref|XP_003609122.1| Replication factor A 51
           kDa subunit [Medicago truncatula]
           gi|355507966|gb|AES89108.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510131|gb|AES91273.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
           gi|355510177|gb|AES91319.1| Replication factor A 51 kDa
           subunit [Medicago truncatula]
          Length = 502

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 5/150 (3%)
 Frame = +1

Query: 4   MGLDESYKGET-YTCRATIGYIFNTNWYYXXXXXXXXXXXV---VDRVCPDCGVEVGSRS 171
           M +   Y+G+  Y C AT+  I   N  Y                D  C  C  +V    
Sbjct: 299 MAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPK 358

Query: 172 ERYMLRMDVEDPSGVTLFVAFDREAEYLIQKPVTELVDSYKKENGPQA-VQTALEQVAGK 348
            RY L + V D +  T+FV F   AE L Q  + +L    + + G  + +   L+ + G 
Sbjct: 359 IRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGS 418

Query: 349 EFIFQVKINYYSQNKENQSFVIYKIFPTTV 438
           + IFQVK++ Y + +  QSF  +KI    V
Sbjct: 419 KHIFQVKLSSYFERRGVQSFTAHKILKPVV 448


>ref|XP_002872320.1| hypothetical protein ARALYDRAFT_351828 [Arabidopsis lyrata subsp.
           lyrata] gi|297318157|gb|EFH48579.1| hypothetical protein
           ARALYDRAFT_351828 [Arabidopsis lyrata subsp. lyrata]
          Length = 186

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
 Frame = +1

Query: 13  DESYKGETYTCRA-TIGYIFNTNWYYXXXXXXXXXXXVVDRVCPDCGVEVGSRSE----- 174
           +E  +   + C A  +G +    W Y              R C DCG  +  R+      
Sbjct: 19  NEQTQDAEFFCNAYVVGVLQRNGWTY--------------RSCKDCGRNLEKRTTLLRCK 64

Query: 175 -----------RYMLRMDVEDPSGVTLFVAFDREAEYLIQKPVTELVDSYKKENGPQAVQ 321
                      RY + +DV D    T FV  D+E   L  K  T ++D    +     + 
Sbjct: 65  SCVTPNEEGILRYRVELDVHDGEHGTTFVILDKEMRKLTNKTATTIMDEKGNKGNNNILP 124

Query: 322 TALEQVAGKEFIFQVKINYYSQNKENQSFVIYKI 423
           T L  +AGK F FQ++++  +   +NQ+F++  I
Sbjct: 125 TCLSDLAGKHFRFQIRVSPLNYTPKNQNFMVSNI 158