BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027321
         (299 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001185295.1| pentatricopeptide repeat-containing protein ...    98   8e-19
ref|NP_176479.2| pentatricopeptide repeat-containing protein [Ar...    97   1e-18
emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]         97   2e-18
ref|NP_176529.1| pentatricopeptide repeat-containing protein [Ar...    96   2e-18
ref|NP_176447.1| pentatricopeptide repeat-containing protein [Ar...    96   2e-18

>ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
           gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB
           PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana] gi|332195900|gb|AEE34021.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 528

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 51/99 (51%), Positives = 62/99 (62%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTFTTL+ GL L  K  EAV L+++ V  G   D VTYG V+NGLCK  + D AL LL  
Sbjct: 184 VTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNK 243

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ME  KI ANV +YS ++D LCK    +D L +F EM  K
Sbjct: 244 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 282



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/97 (34%), Positives = 54/97 (55%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF+ L+     +GK V+A +L E+ +      +  TY  +ING C    +  A ++L  
Sbjct: 324 VTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLEL 383

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMS 292
           M  K  + NV  Y+ +++G CK  RV+ G+ +F+EMS
Sbjct: 384 MIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMS 420



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 28/95 (29%), Positives = 49/95 (51%)
 Frame = +2

Query: 5   TFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRAM 184
           T+++L+ G  +  +  EA ++LE  +      + VTY  +ING CK   VD  + L R M
Sbjct: 360 TYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM 419

Query: 185 EMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEM 289
             + +V N   Y+ ++ G  +    ++   VFK+M
Sbjct: 420 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 454


>ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62910 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a
           RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
           gi|332195899|gb|AEE34020.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 50/98 (51%), Positives = 65/98 (66%)
 Frame = +2

Query: 5   TFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRAM 184
           TFTTL+ GL L  K  EAV L+++ V  G   D VTYG V+NGLCK  ++D AL LL+ M
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249

Query: 185 EMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           E  KI A+V +Y+ I+DGLCK   ++D L +F EM  K
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNK 287



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 35/97 (36%), Positives = 51/97 (52%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF+ L+     +GK VEA +L ++ +      D  TY  +ING C    +D A  +   
Sbjct: 329 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 388

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMS 292
           M  K    NV  YS ++ G CK  RV +G+ +F+EMS
Sbjct: 389 MISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 33/96 (34%), Positives = 50/96 (52%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VT+ T++ GL  +G    A+ LL+K        D V Y  +I+GLCK  ++D AL L   
Sbjct: 224 VTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTE 283

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEM 289
           M+ K I  +V  YS ++  LC   R +D   +  +M
Sbjct: 284 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 319


>emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/99 (49%), Positives = 65/99 (65%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF TL+ GL L  K  EAV L+++ V  G   D VTYG V+NGLCK  ++D AL LL+ 
Sbjct: 186 VTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKK 245

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ME  KI A+V +Y+ I+DGLCK   ++D  A+F +M  K
Sbjct: 246 MEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETK 284



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 51/97 (52%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF+ L+     +GK VEA +L ++ +      D  TY  +ING C    +D A  +   
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMS 292
           M  K    NV  Y+ ++ G CK  RV +G+ +F+EMS
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422



 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 31/99 (31%), Positives = 60/99 (60%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VT+ TL++GL   G    A ++ +K V +G   D +TY ++++GLCK   ++ AL +   
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ++  K+  ++  Y+++++G+CK  +V DG  +F  +S K
Sbjct: 491 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 529



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 29/94 (30%), Positives = 50/94 (53%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VT+ TL+KG     +  E +EL  +    G   + VTY  +I GL +  + D A ++ + 
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 455

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFK 283
           M    +  ++  YS+++DGLCK  ++   L VF+
Sbjct: 456 MVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 52/96 (54%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           +T++ LL GL   GK  +A+ + E    +    D  TY ++I G+CK   V+    L  +
Sbjct: 466 ITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEM 289
           + +K +  NV +Y+ ++ G C++    +  A+F+EM
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREM 561


>ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g63400 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22
           [Arabidopsis thaliana] gi|332195974|gb|AEE34095.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 577

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 49/99 (49%), Positives = 63/99 (63%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           +TFTTL+ GL L  K  EAV L+++ V  G   + VTYGVV+NGLCK  ++D A  LL  
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 250

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ME  KI ANV +YS ++D LCK    +D L +F EM  K
Sbjct: 251 MEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK 289



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 52/97 (53%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF  L+     +GK VEA +L ++ +      D  TY  +ING C    +D A  +   
Sbjct: 331 VTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 390

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMS 292
           M  K    NV  Y+ +++G CK  R+++G+ +F+EMS
Sbjct: 391 MISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 47/95 (49%)
 Frame = +2

Query: 5   TFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRAM 184
           T+++L+ G  +  +  EA  + E  +      + VTY  +ING CK   +D  + L R M
Sbjct: 367 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM 426

Query: 185 EMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEM 289
             + +V N   Y+ ++ G  +    ++   VFK+M
Sbjct: 427 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQM 461



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 27/99 (27%), Positives = 55/99 (55%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VT+TTL+ G         A  + ++ V +G   + +TY  +++GLCK   ++ A+ +   
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ++  K+   +  Y+++++G+CK  +V DG  +F  +S K
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK 534


>ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g62590 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15
           [Arabidopsis thaliana] gi|332195860|gb|AEE33981.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 634

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/99 (50%), Positives = 65/99 (65%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           +TFTTL+ GL L  K  EAV L+++ V  G   + VTYGVV+NGLCK  + D AL LL  
Sbjct: 191 ITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNK 250

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           ME  KI A+V +++ I+D LCK   V+D L +FKEM  K
Sbjct: 251 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETK 289



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/99 (31%), Positives = 61/99 (61%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VT+TTL++GL   G    A ++ ++ V +G   D +TY ++++GLC    ++ AL +   
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 495

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMSGK 298
           M+  +I  ++ +Y+ +++G+CK  +V+DG  +F  +S K
Sbjct: 496 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLK 534



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 33/97 (34%), Positives = 49/97 (50%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           VTF  L+     +GK VEA +L +  +      D  TY  ++NG C    +D A ++   
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEMS 292
           M  K    +V  Y+ ++ G CK  RV DG  +F+EMS
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMS 427



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/96 (29%), Positives = 51/96 (53%)
 Frame = +2

Query: 2   VTFTTLLKGLSLQGKRVEAVELLEKFVCNGYTVDHVTYGVVINGLCKGMNVDAALRLLRA 181
           +T++ LL GL   GK  +A+E+ +    +   +D   Y  +I G+CK   VD    L  +
Sbjct: 471 MTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS 530

Query: 182 MEMKKIVANVELYSMIVDGLCKQNRVNDGLAVFKEM 289
           + +K +  NV  Y+ ++ GLC +  + +  A+ K+M
Sbjct: 531 LSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566