BLASTX nr result
ID: Coptis24_contig00027120
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00027120
(1073 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002528710.1| DNA binding protein, putative [Ricinus commu... 173 6e-41
ref|XP_002266425.1| PREDICTED: uncharacterized protein LOC100267... 169 1e-39
ref|XP_004170022.1| PREDICTED: uncharacterized protein LOC101225... 160 5e-37
ref|XP_004142729.1| PREDICTED: uncharacterized protein LOC101206... 160 5e-37
ref|XP_002323683.1| predicted protein [Populus trichocarpa] gi|2... 158 2e-36
>ref|XP_002528710.1| DNA binding protein, putative [Ricinus communis]
gi|223531882|gb|EEF33699.1| DNA binding protein, putative
[Ricinus communis]
Length = 580
Score = 173 bits (439), Expect = 6e-41
Identities = 92/164 (56%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Frame = +1
Query: 586 PLTGYSASNGRVIANGRNXXXXXXXXXXXXXXXXXXQPIVPPDFPLDTPPNLRTTMPDRP 765
P +G S S GRV +NGR QP+VPPDFPLDTPPNLRTT+PDRP
Sbjct: 294 PASGPSISAGRVPSNGRISAPASRPSSPGPRIRPSQQPVVPPDFPLDTPPNLRTTLPDRP 353
Query: 766 VSAGRSRPSAAVSGRGNSE-PGLTNPPRRQSSSPIVTRGRLPDPPGKGRLHSNGNSINAV 942
+SAGRSRP A+ + +G+ E G TN PRR SSPIV+RGRL + PGKGR HSNG++ +
Sbjct: 354 ISAGRSRPGASTTIKGSPETTGATNVPRRH-SSPIVSRGRLAEAPGKGRAHSNGHAADIS 412
Query: 943 ESQRTPPVIDPASRRPAKSA-TATESSGFGRTISKKSLDMALRH 1071
E ++ V DP R+P KS+ T T+++GFGRTISKKSLDMA+RH
Sbjct: 413 EPRKVSHVSDPGMRKPVKSSVTTTDNNGFGRTISKKSLDMAIRH 456
Score = 57.8 bits (138), Expect = 5e-06
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +1
Query: 4 LTSVDDGGKNDYDWLLTPPGTPLL--SDTSEPQQYIAPXXXXXXXXXXXXTKTSRLSMTQ 177
L S DGGK+DYDWLLTPPGTPL SD S+ Q + TK SRLS++Q
Sbjct: 96 LLSSTDGGKHDYDWLLTPPGTPLFPTSDGSDSQPTLVAPRSRSLSRSVSTTKASRLSVSQ 155
Query: 178 LENSY 192
E+ +
Sbjct: 156 SESQH 160
>ref|XP_002266425.1| PREDICTED: uncharacterized protein LOC100267210 [Vitis vinifera]
gi|147841364|emb|CAN71240.1| hypothetical protein
VITISV_034160 [Vitis vinifera]
gi|296085846|emb|CBI31170.3| unnamed protein product
[Vitis vinifera]
Length = 570
Score = 169 bits (428), Expect = 1e-39
Identities = 91/163 (55%), Positives = 113/163 (69%), Gaps = 1/163 (0%)
Frame = +1
Query: 586 PLTGYSASNGRVIANGRNXXXXXXXXXXXXXXXXXXQPIVPPDFPLDTPPNLRTTMPDRP 765
P G S S R ++NGRN QPIV PDFPLDTPPNLRTT+PDRP
Sbjct: 277 PTAGPSPSTARAMSNGRNPAPASRPSSPSPRVRNPPQPIVLPDFPLDTPPNLRTTLPDRP 336
Query: 766 VSAGRSRPSAAVSGRGNSEPGLTNPPRRQSSSPIVTRGRLPDPPGKGRLHSNGNSINAVE 945
+SAGRSRP AA++ +GNSE P R+ SSPIVTRGR+ +P +GRLHSNG+ ++ E
Sbjct: 337 LSAGRSRPGAAMTMKGNSET-----PTRRQSSPIVTRGRVSEPNARGRLHSNGHVADSPE 391
Query: 946 SQRTPPVIDPASRRPAK-SATATESSGFGRTISKKSLDMALRH 1071
S++ V +P SR+P K S T++ES+GFGRTISKKSLDMA+RH
Sbjct: 392 SRKASHVTEP-SRKPVKTSTTSSESTGFGRTISKKSLDMAIRH 433
Score = 58.9 bits (141), Expect = 2e-06
Identities = 34/66 (51%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Frame = +1
Query: 1 LLTSVDDGGKNDYDWLLTPPGTPLL--SDTSEPQQYIAPXXXXXXXXXXXXTKTSRLSMT 174
LL+SV+ GGK+DYDWLLTPPGTPL SD +E Q + TK SRLS+
Sbjct: 80 LLSSVE-GGKHDYDWLLTPPGTPLFPSSDGNESQPTMLAPRNSNLARSASTTKASRLSVA 138
Query: 175 QLENSY 192
Q E+SY
Sbjct: 139 QSESSY 144
>ref|XP_004170022.1| PREDICTED: uncharacterized protein LOC101225804, partial [Cucumis
sativus]
Length = 484
Score = 160 bits (405), Expect = 5e-37
Identities = 84/163 (51%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Frame = +1
Query: 589 LTGYSASNGRVIA-NGRNXXXXXXXXXXXXXXXXXXQPIVPPDFPLDTPPNLRTTMPDRP 765
+ G +S RV++ NGR+ QPIVPPDFPLDTPPNLRTT+PDRP
Sbjct: 187 VVGTPSSTSRVLSTNGRSSTSTSRPSSPSPRVRAAPQPIVPPDFPLDTPPNLRTTLPDRP 246
Query: 766 VSAGRSRPSAAVSGRGNSEPGLTNPPRRQSSSPIVTRGRLPDPPGKGRLHSNGNSINAVE 945
+SAGRSRP+ A S RG+ E T R+++SP +TRGR+ D PG+GRL++NG+ ++ E
Sbjct: 247 ISAGRSRPTPASSVRGSPETTSTGTVPRRAASPTITRGRITDAPGRGRLNTNGHLSDSPE 306
Query: 946 SQRTPPVIDPASRRPAKSATAT-ESSGFGRTISKKSLDMALRH 1071
++R D + RRP K++T T ES+GFGR+ISKKSLDMA+RH
Sbjct: 307 TRRLSSSSDLSGRRPVKASTTTAESNGFGRSISKKSLDMAIRH 349
>ref|XP_004142729.1| PREDICTED: uncharacterized protein LOC101206216 [Cucumis sativus]
Length = 578
Score = 160 bits (405), Expect = 5e-37
Identities = 84/163 (51%), Positives = 112/163 (68%), Gaps = 2/163 (1%)
Frame = +1
Query: 589 LTGYSASNGRVIA-NGRNXXXXXXXXXXXXXXXXXXQPIVPPDFPLDTPPNLRTTMPDRP 765
+ G +S RV++ NGR+ QPIVPPDFPLDTPPNLRTT+PDRP
Sbjct: 281 VVGTPSSTSRVLSTNGRSSTSTSRPSSPSPRVRAAPQPIVPPDFPLDTPPNLRTTLPDRP 340
Query: 766 VSAGRSRPSAAVSGRGNSEPGLTNPPRRQSSSPIVTRGRLPDPPGKGRLHSNGNSINAVE 945
+SAGRSRP+ A S RG+ E T R+++SP +TRGR+ D PG+GRL++NG+ ++ E
Sbjct: 341 ISAGRSRPTPASSVRGSPETTSTGTVPRRAASPTITRGRITDAPGRGRLNTNGHLSDSPE 400
Query: 946 SQRTPPVIDPASRRPAKSATAT-ESSGFGRTISKKSLDMALRH 1071
++R D + RRP K++T T ES+GFGR+ISKKSLDMA+RH
Sbjct: 401 TRRLSSSSDLSGRRPVKASTTTAESNGFGRSISKKSLDMAIRH 443
>ref|XP_002323683.1| predicted protein [Populus trichocarpa] gi|222868313|gb|EEF05444.1|
predicted protein [Populus trichocarpa]
Length = 596
Score = 158 bits (400), Expect = 2e-36
Identities = 88/159 (55%), Positives = 109/159 (68%), Gaps = 2/159 (1%)
Frame = +1
Query: 601 SASNGRVIANGRNXXXXXXXXXXXXXXXXXXQPIVPPDFPLDTPPNLRTTMPDRPVSAGR 780
S S GRV++N R QP+VPPDFPLDTPPNLRTT+PDRP+SAGR
Sbjct: 307 STSAGRVLSNNR-IPGPTSRPNSPSPRVRPQQPVVPPDFPLDTPPNLRTTLPDRPLSAGR 365
Query: 781 SRPSAAVSGRGNSEP-GLTNPPRRQSSSPIVTRGRLPDPPGKGRLHSNGNSINAVESQRT 957
SRP+ + +GN E G PRR SSPIV+RGRL +P GKGR+HSNG+ +A E ++
Sbjct: 366 SRPNVHATMKGNPETVGSVIAPRRH-SSPIVSRGRLTEPSGKGRVHSNGHIADAPEPRKV 424
Query: 958 PPVIDPASRRPAK-SATATESSGFGRTISKKSLDMALRH 1071
V + R+P K S+TA+ES+GFGRTISKKSLDMA+RH
Sbjct: 425 SHVSELGMRKPVKSSSTASESTGFGRTISKKSLDMAIRH 463