BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027064
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containi...   241   6e-62
emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]   238   3e-61
ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containi...   235   3e-60
ref|XP_003598203.1| Pentatricopeptide repeat-containing protein ...   231   3e-59
sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-c...   229   1e-58

>ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial [Vitis vinifera]
           gi|296088528|emb|CBI37519.3| unnamed protein product
           [Vitis vinifera]
          Length = 525

 Score =  241 bits (614), Expect = 6e-62
 Identities = 109/152 (71%), Positives = 136/152 (89%), Gaps = 1/152 (0%)
 Frame = -1

Query: 461 MLNGICRKSSLHPETRFENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSL 282
           +LNGICR++SLHP+ RFE  +R A+K+ +EM+++GIEPDVTSYSIV+HVYSRAHKP+L+L
Sbjct: 263 LLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTL 322

Query: 281 DKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEY 102
           DKL MMK+KGI+PT+ TYTSV+KCLCSCGR+EDAE+L+ +MV +GVSPS ATYNCFFKEY
Sbjct: 323 DKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEY 382

Query: 101 RGRKDTDSALTLYRKMGES-SCMPSLQTYNIL 9
           RGRKD+D+AL LYRKM E  SC+P + TYNIL
Sbjct: 383 RGRKDSDNALRLYRKMKEEYSCLPDMHTYNIL 414



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
 Frame = -1

Query: 401 VRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTS 222
           V+ A ++F + + +  E +   Y+I+++ + + ++  ++   L  M E+GI   +VTY  
Sbjct: 204 VKLASQIFNQRKFK-FEANAKMYTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNV 262

Query: 221 VIKCLCSCG----------RIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDTDSAL 72
           ++  +C              I DAEK+LDEM   G+ P   +Y+     Y      +  L
Sbjct: 263 LLNGICRRASLHPDDRFERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTL 322

Query: 71  TLYRKMGESSCMPSLQTY 18
              R M +    P++ TY
Sbjct: 323 DKLRMMKDKGIWPTVATY 340


>emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
          Length = 525

 Score =  238 bits (608), Expect = 3e-61
 Identities = 109/152 (71%), Positives = 134/152 (88%), Gaps = 1/152 (0%)
 Frame = -1

Query: 461 MLNGICRKSSLHPETRFENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSL 282
           +LNGICR +SLHP+ RFE  +R A+K+ +EM++ GIEPDVTSYSIV+HVYSRAHKP+L+L
Sbjct: 263 LLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTL 322

Query: 281 DKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEY 102
           DKL MMK+KGI+PT+ TYTSV+KCLCSCGR+EDAE+L+ +MV +GVSPS ATYNCFFKEY
Sbjct: 323 DKLRMMKDKGIWPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEY 382

Query: 101 RGRKDTDSALTLYRKMGES-SCMPSLQTYNIL 9
           RGRKD+D+AL LYRKM E  SC+P + TYNIL
Sbjct: 383 RGRKDSDNALRLYRKMKEEYSCLPDMHTYNIL 414



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 10/138 (7%)
 Frame = -1

Query: 401 VRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTS 222
           V+ A ++F + + +  E +   Y+I+++ + + ++  ++   L  M E+G+   +VTY  
Sbjct: 204 VKLASQIFNQRKFK-FEANAKMYTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNV 262

Query: 221 VIKCLCSCG----------RIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDTDSAL 72
           ++  +C              I DAEK+LDEM   G+ P   +Y+     Y      +  L
Sbjct: 263 LLNGICRXASLHPDDRFERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTL 322

Query: 71  TLYRKMGESSCMPSLQTY 18
              R M +    P++ TY
Sbjct: 323 DKLRMMKDKGIWPTVATY 340


>ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
           gi|449523938|ref|XP_004168980.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g13420,
           mitochondrial-like [Cucumis sativus]
          Length = 506

 Score =  235 bits (599), Expect = 3e-60
 Identities = 110/152 (72%), Positives = 129/152 (84%), Gaps = 1/152 (0%)
 Frame = -1

Query: 461 MLNGICRKSSLHPETRFENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSL 282
           +LNG+CR++SLHPE RFE  +R A+K+F+EM++RGIEPDVTS+SIVLHVYSRAHKP+LSL
Sbjct: 244 LLNGVCRRASLHPEGRFEKTIRHAEKVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSL 303

Query: 281 DKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEY 102
           DKL  MKE GI PT+ TYTSVIKCLCSCGR+ED E L++EMV +G+SPSP TYNCFFKEY
Sbjct: 304 DKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGENLIEEMVRSGISPSPTTYNCFFKEY 363

Query: 101 RGRKDTDSALTLYRKMGESS-CMPSLQTYNIL 9
           RGRKD   AL LY+KM E   C PSL TYNIL
Sbjct: 364 RGRKDGAGALRLYKKMREDCLCAPSLHTYNIL 395


>ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355487251|gb|AES68454.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 503

 Score =  231 bits (590), Expect = 3e-59
 Identities = 110/152 (72%), Positives = 126/152 (82%), Gaps = 1/152 (0%)
 Frame = -1

Query: 461 MLNGICRKSSLHPETRFENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSL 282
           +LNGICRK+SLHPE RFE  +R A+K+F+EM+E GIEPDVTS+SIVLHVYSRAHKP L L
Sbjct: 241 ILNGICRKASLHPEERFERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVL 300

Query: 281 DKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEY 102
           DKL +MKEKGI P +VTYTSVIKCLCSCGRIE+AE L+DEMV NGVSP  ATYNCFFKEY
Sbjct: 301 DKLGLMKEKGICPNVVTYTSVIKCLCSCGRIEEAEDLIDEMVRNGVSPCAATYNCFFKEY 360

Query: 101 RGRKDTDSALTLYRKMGESS-CMPSLQTYNIL 9
           RGRKD D AL  ++KM E   C P+  TY +L
Sbjct: 361 RGRKDADKALKFFKKMKEDGLCEPTTHTYGVL 392



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
 Frame = -1

Query: 401 VRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSLDKLNMMKEKGIFPTIVTYTS 222
           V+ A +LF     R +  DV  Y+++++ + +  +   +L  LN MK KG+ P +VTY  
Sbjct: 182 VKHACELFNRNSNRFVA-DVKMYTVLIYGWCKIGRFKTALSFLNEMKVKGVEPNVVTYNV 240

Query: 221 VIKCLCSCG----------RIEDAEKLLDEMVSNGVSPSPATYNCFFKEYRGRKDTDSAL 72
           ++  +C              I DAEK+ DEM  +G+ P   +++     Y         L
Sbjct: 241 ILNGICRKASLHPEERFERTIRDAEKVFDEMRESGIEPDVTSFSIVLHVYSRAHKPQLVL 300

Query: 71  TLYRKMGESSCMPSLQTY 18
                M E    P++ TY
Sbjct: 301 DKLGLMKEKGICPNVVTY 318


>sp|Q0WP85.1|PP150_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g13420, mitochondrial; Flags: Precursor
           gi|110738270|dbj|BAF01064.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 509

 Score =  229 bits (585), Expect = 1e-58
 Identities = 105/151 (69%), Positives = 129/151 (85%)
 Frame = -1

Query: 461 MLNGICRKSSLHPETRFENVVRAADKLFEEMQERGIEPDVTSYSIVLHVYSRAHKPDLSL 282
           +LNGICR +SLHPE RFE  VR A+K+F+EM++RGIEPDVTS+SIVLH+YSRAHK +L+L
Sbjct: 248 LLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFSIVLHMYSRAHKAELTL 307

Query: 281 DKLNMMKEKGIFPTIVTYTSVIKCLCSCGRIEDAEKLLDEMVSNGVSPSPATYNCFFKEY 102
           DK+ +MK KGI PTI TYTSV+KCLCSCGR+E+AE+LL+ MV +G+SPS ATYNCFFKEY
Sbjct: 308 DKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVESGISPSSATYNCFFKEY 367

Query: 101 RGRKDTDSALTLYRKMGESSCMPSLQTYNIL 9
           +GRKD + A+ LYRKM    C PS QTYN+L
Sbjct: 368 KGRKDANGAMNLYRKMKNGLCKPSTQTYNVL 398