BLASTX nr result

ID: Coptis24_contig00027003 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00027003
         (406 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60458.1| hypothetical protein VITISV_019556 [Vitis vinifera]    91   7e-17
emb|CBI15905.3| unnamed protein product [Vitis vinifera]               91   1e-16
ref|XP_002278283.1| PREDICTED: uncharacterized protein LOC100265...    91   1e-16
ref|XP_002298496.1| predicted protein [Populus trichocarpa] gi|2...    85   5e-15
ref|XP_002313971.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13

>emb|CAN60458.1| hypothetical protein VITISV_019556 [Vitis vinifera]
          Length = 231

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 47/72 (65%), Positives = 50/72 (69%)
 Frame = -2

Query: 216 MDSISGGGSTDMNITEGSSAATXXXXXXXXXXXXVPLSRYESQKRRDWNTFLQYLKNHKP 37
           MDS SGGG+ D +  EG SA               P SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSASGGGAADPSSGEGPSAG--GGGGAAEGSSPAPPSRYESQKRRDWNTFLQYLKNHKP 58

Query: 36  PLSLARCSGAHV 1
           PL+LARCSGAHV
Sbjct: 59  PLTLARCSGAHV 70


>emb|CBI15905.3| unnamed protein product [Vitis vinifera]
          Length = 226

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 47/73 (64%), Positives = 51/73 (69%)
 Frame = -2

Query: 219 LMDSISGGGSTDMNITEGSSAATXXXXXXXXXXXXVPLSRYESQKRRDWNTFLQYLKNHK 40
           +MDS SGGG+ D +  EG SA               P SRYESQKRRDWNTFLQYLKNHK
Sbjct: 41  VMDSASGGGAADPSGGEGPSAG--GGGGAAEGSSPAPPSRYESQKRRDWNTFLQYLKNHK 98

Query: 39  PPLSLARCSGAHV 1
           PPL+LARCSGAHV
Sbjct: 99  PPLTLARCSGAHV 111


>ref|XP_002278283.1| PREDICTED: uncharacterized protein LOC100265705 [Vitis vinifera]
          Length = 231

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 47/72 (65%), Positives = 50/72 (69%)
 Frame = -2

Query: 216 MDSISGGGSTDMNITEGSSAATXXXXXXXXXXXXVPLSRYESQKRRDWNTFLQYLKNHKP 37
           MDS SGGG+ D +  EG SA               P SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSASGGGAADPSGGEGPSAG--GGGGAAEGSSPAPPSRYESQKRRDWNTFLQYLKNHKP 58

Query: 36  PLSLARCSGAHV 1
           PL+LARCSGAHV
Sbjct: 59  PLTLARCSGAHV 70


>ref|XP_002298496.1| predicted protein [Populus trichocarpa] gi|222845754|gb|EEE83301.1|
           predicted protein [Populus trichocarpa]
          Length = 228

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 45/81 (55%), Positives = 50/81 (61%), Gaps = 9/81 (11%)
 Frame = -2

Query: 216 MDSISGGGSTD---------MNITEGSSAATXXXXXXXXXXXXVPLSRYESQKRRDWNTF 64
           MDS SGG +              T GSS+A+             P SRYESQKRRDWNTF
Sbjct: 1   MDSTSGGATAPGPNSGEPCPSAATAGSSSASQPQQQPEGSSPPAPPSRYESQKRRDWNTF 60

Query: 63  LQYLKNHKPPLSLARCSGAHV 1
           LQY+KNHKPPL+LARCSGAHV
Sbjct: 61  LQYIKNHKPPLTLARCSGAHV 81


>ref|XP_002313971.1| predicted protein [Populus trichocarpa] gi|222850379|gb|EEE87926.1|
           predicted protein [Populus trichocarpa]
          Length = 223

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 46/81 (56%), Positives = 49/81 (60%), Gaps = 9/81 (11%)
 Frame = -2

Query: 216 MDSISGGGST-DMNITE--------GSSAATXXXXXXXXXXXXVPLSRYESQKRRDWNTF 64
           MDS SG  S  D N  E         +SA+              P SRYESQKRRDWNTF
Sbjct: 1   MDSTSGVASAPDPNSGEPGPSAGSSSASASLPQQQQPEGSSPPAPPSRYESQKRRDWNTF 60

Query: 63  LQYLKNHKPPLSLARCSGAHV 1
           LQYLKNHKPPL+LARCSGAHV
Sbjct: 61  LQYLKNHKPPLTLARCSGAHV 81


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