BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026907
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36977.3| unnamed protein product [Vitis vinifera]               99   4e-19
ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...    80   2e-13
gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indi...    79   5e-13
ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containi...    78   7e-13

>emb|CBI36977.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 52/100 (52%), Positives = 68/100 (68%)
 Frame = -1

Query: 300 VITSVSSNTFHVLLLPLLHAQVICLAFNLSVFVGSALITSYEKWGCEKSLRGVFDEIPVK 121
           +I+++    F+VL  P +HA V+ L FN SVFVGSAL+  Y   G   +L  VFDEI +K
Sbjct: 124 MISAILDTVFNVLT-PQIHAVVVSLGFNSSVFVGSALMRGYAHVGDRVALGRVFDEISIK 182

Query: 120 DVTSWNALITGYMNLGFVEEGCLAFEMMGERNVVSWTSLV 1
           +V SWNAL+ GYM+LG  +E    F +M ERNVVSWT+LV
Sbjct: 183 NVASWNALVLGYMDLGDTDEAQRVFGLMPERNVVSWTTLV 222


>ref|XP_003571354.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 37/83 (44%), Positives = 54/83 (65%)
 Frame = -1

Query: 249 LHAQVICLAFNLSVFVGSALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGYMNLGF 70
           +H  +I + F + VF+G +LIT Y ++G     R VF  +  KDV SWN+LITGY+    
Sbjct: 287 IHGLIIAMGFEMDVFLGDSLITLYSRFGWMVDARRVFAYMTWKDVVSWNSLITGYVQHNM 346

Query: 69  VEEGCLAFEMMGERNVVSWTSLV 1
           VEE  + F++M E++ VSWTS+V
Sbjct: 347 VEEAHVLFKLMPEKDAVSWTSMV 369



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/66 (39%), Positives = 39/66 (59%)
 Frame = -1

Query: 198 SALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGYMNLGFVEEGCLAFEMMGERNVV 19
           +AL+TSY + G  +  + +FD +P +DV SW AL+T Y + G      L F+ M  RN  
Sbjct: 46  NALLTSYGRRGMLRDAQQLFDRMPRRDVISWTALLTAYADNGDPASARLVFDDMPRRNAA 105

Query: 18  SWTSLV 1
           SW +L+
Sbjct: 106 SWNALL 111



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
 Frame = -1

Query: 204 VGS-ALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGYMNLGFVEEGCLAFEMMGER 28
           VGS ALI +Y + G       VF+ + V+DV SW A++ G    G V E    FE M ER
Sbjct: 169 VGSNALIAAYVRAGELSLALRVFEGMAVRDVISWTAVVDGLCKNGSVLEARKVFEAMPER 228

Query: 27  NVVSWTSLV 1
           NVVSWTS++
Sbjct: 229 NVVSWTSMI 237


>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 40/88 (45%), Positives = 59/88 (67%)
 Frame = -1

Query: 264 LLLPLLHAQVICLAFNLSVFVGSALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGY 85
           +L+  +HA    L   L+VFVGS+LI +Y     E++L   F++I +KDVTSWNAL++ Y
Sbjct: 123 VLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEEALGRAFNDISMKDVTSWNALVSSY 182

Query: 84  MNLGFVEEGCLAFEMMGERNVVSWTSLV 1
           M LG   +   AF+ M +RN++SWT+LV
Sbjct: 183 MELGKFVDAQTAFDQMPQRNIISWTTLV 210


>gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 33/83 (39%), Positives = 54/83 (65%)
 Frame = -1

Query: 249 LHAQVICLAFNLSVFVGSALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGYMNLGF 70
           +H  +I + F L +F+G ++I  Y ++GC    +  FD +  KD+ SWN+LITGY+    
Sbjct: 283 IHNLIISMGFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQKDIVSWNSLITGYVQHDM 342

Query: 69  VEEGCLAFEMMGERNVVSWTSLV 1
           VEE  + F++M +++ VSWTS+V
Sbjct: 343 VEEAHVLFKLMHQKDAVSWTSMV 365


>ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
           mitochondrial-like [Brachypodium distachyon]
          Length = 474

 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 39/83 (46%), Positives = 49/83 (59%)
 Frame = -1

Query: 249 LHAQVICLAFNLSVFVGSALITSYEKWGCEKSLRGVFDEIPVKDVTSWNALITGYMNLGF 70
           LH  VI   F    +V ++LI +Y   GC    R  FDE+PVK+V SWN +ITG+   G 
Sbjct: 116 LHGLVIRKGFEFHAYVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGE 175

Query: 69  VEEGCLAFEMMGERNVVSWTSLV 1
           +E   L FE M  RNVVSWT L+
Sbjct: 176 IEYARLLFERMPSRNVVSWTGLI 198