BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026874
         (355 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]    89   5e-16
ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containi...    87   1e-15
ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|2...    84   1e-14
ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containi...    81   8e-14
ref|XP_002516576.1| pentatricopeptide repeat-containing protein,...    79   3e-13

>emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
          Length = 1331

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 51/121 (42%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
 Frame = +1

Query: 1    LSITSRGLRFVTTSSTCSNPLFLKLLQGSTSNIKPTLDCEAE---NQDSLIWEPLLTSLK 171
            + I  R  R        SNPL +KLLQ S S IK  LD E           W+ LLT+LK
Sbjct: 931  IGIPQRSQRLFCDKPLVSNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILLTTLK 990

Query: 172  SSSPQKAQXXXXXXXXXXXXXNERDQCRYSELIYICGRVRNVQFALKVFTVMEGQGVRPT 351
            SSSP KA              NERD   Y ELI++C +V+NV FA++VF  ME  G++ T
Sbjct: 991  SSSPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSMEAHGIKLT 1050

Query: 352  S 354
            S
Sbjct: 1051 S 1051


>ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Vitis vinifera]
           gi|296081891|emb|CBI20896.3| unnamed protein product
           [Vitis vinifera]
          Length = 420

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 51/119 (42%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
 Frame = +1

Query: 7   ITSRGLRFVTTSSTCSNPLFLKLLQGSTSNIKPTLDCEAE---NQDSLIWEPLLTSLKSS 177
           I  R  R        SNPL +KLLQ S S IK  LD E           W+ LLT+LKSS
Sbjct: 22  IPCRSQRLFCDKPLVSNPLLIKLLQESISRIKTVLDSEDNFTFKSSDFSWDILLTTLKSS 81

Query: 178 SPQKAQXXXXXXXXXXXXXNERDQCRYSELIYICGRVRNVQFALKVFTVMEGQGVRPTS 354
           SP KA              NERD   Y ELI++C +V+NV FA++VF  ME  G++ TS
Sbjct: 82  SPAKAHLVLEWRLEKMVRDNERDLVPYLELIFLCSKVQNVPFAMRVFNSMEAHGIKLTS 140


>ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1|
           predicted protein [Populus trichocarpa]
          Length = 424

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 48/112 (42%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
 Frame = +1

Query: 28  FVTTSSTCSNPLFLKLLQGSTSNIKPTLDCEAE---NQDSLIWEPLLTSLKSSSPQKAQX 198
           F T SS  S+PL  KLLQ  TS I  TLD +         L W+PL+T+L+SSSP+KA  
Sbjct: 36  FSTASS--SDPLLSKLLQTPTSKIIITLDSDHSFNLKSSQLSWDPLITNLRSSSPEKAHL 93

Query: 199 XXXXXXXXXXXXNERDQCRYSELIYICGRVRNVQFALKVFTVMEGQGVRPTS 354
                       NE D   YS LI +CG+++NV  A+ VF  ME +G++PT+
Sbjct: 94  VLEWRLGRMLDDNEIDHDEYSSLISLCGKIQNVSLAMHVFASMEARGIKPTT 145


>ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 421

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
 Frame = +1

Query: 34  TTSSTCSNPLFLKLLQGSTSNIKPTLDCEAENQDSL--IWEPLLTSLKSSSPQKAQXXXX 207
           + S + SNPL LKLLQ   S+IK TLD E  +  S    W+ L+TSL  SS  KA+    
Sbjct: 32  SNSHSNSNPLLLKLLQVPNSHIKTTLDQEMASLQSSQRSWDFLITSLSPSSSDKARLILE 91

Query: 208 XXXXXXXXXNERDQCRYSELIYICGRVRNVQFALKVFTVMEGQGVRPTS 354
                    NE+D+  +SELI++CG+V++V   ++VF+ ME  GV+P S
Sbjct: 92  WILEKMLKENEKDRDLFSELIFLCGKVKDVMLGMRVFSSMEATGVKPNS 140


>ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544396|gb|EEF45917.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 416

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 44/106 (41%), Positives = 59/106 (55%)
 Frame = +1

Query: 37  TSSTCSNPLFLKLLQGSTSNIKPTLDCEAENQDSLIWEPLLTSLKSSSPQKAQXXXXXXX 216
           T +  SNPL  KLLQ   S IK TLD +  N     ++ L+T+L SSSP+KA+       
Sbjct: 33  TITNSSNPLLSKLLQLPNSKIKSTLDSDL-NSSQFPFDALVTALASSSPEKARLVLEWRL 91

Query: 217 XXXXXXNERDQCRYSELIYICGRVRNVQFALKVFTVMEGQGVRPTS 354
                 NE D   YS LI +C ++ NV  A++VFT MEG G+ P +
Sbjct: 92  DCMLKQNEIDHVHYSNLISLCAKIHNVSLAMRVFTSMEGNGIIPNT 137