BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026849
         (549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   207   1e-51
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              202   3e-50
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   180   1e-43
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   177   7e-43
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   177   7e-43

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  207 bits (526), Expect = 1e-51
 Identities = 107/170 (62%), Positives = 126/170 (74%)
 Frame = +2

Query: 2   HYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKP*QLLSLPAFPAKLQHPLPGRNLGGH 181
           HYS               VSNN+AQLGSPK+  KP QLLSLP FPA   HPLPG++L   
Sbjct: 18  HYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPLPGKSLVNV 74

Query: 182 YGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINP 361
            G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+  D+S  ++   + LRKI P
Sbjct: 75  SGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKP 134

Query: 362 NEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 511
           NE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRLV YK
Sbjct: 135 NEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYK 184


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  202 bits (514), Expect = 3e-50
 Identities = 105/170 (61%), Positives = 125/170 (73%)
 Frame = +2

Query: 2   HYSXXXXXXXXXXXXXXXVSNNIAQLGSPKKEIKP*QLLSLPAFPAKLQHPLPGRNLGGH 181
           HYS               VSNN+AQLGSPK+  KP QLLSLP FPA   HPLPG++L   
Sbjct: 18  HYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPA---HPLPGKSLVNV 74

Query: 182 YGQPSHVTAVTWLKYYFDEICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINP 361
            G P+HVTA++W+KYYFDEI GSV+QSHFNKGLV ME S+  D+S  ++   + LRKI P
Sbjct: 75  SGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKP 134

Query: 362 NEIMEVGAKIYVPVSVAETKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 511
           NE+ME G +IYVPVSVAE +ISKRF+ IPSGTL+PNADEIEYLQRL + K
Sbjct: 135 NEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLK 184


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  180 bits (456), Expect = 1e-43
 Identities = 97/152 (63%), Positives = 111/152 (73%)
 Frame = +2

Query: 56  VSNNIAQLGSPKKEIKP*QLLSLPAFPAKLQHPLPGRNLGGHYGQPSHVTAVTWLKYYFD 235
           VSNN+A LGSPK   KP QLLSLP FP     PLPGRN        SHVTA++W+KYYFD
Sbjct: 34  VSNNVAHLGSPKDGPKPRQLLSLPPFPGL---PLPGRN-----SMASHVTAISWVKYYFD 85

Query: 236 EICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINPNEIMEVGAKIYVPVSVAE 415
           EI  S IQSHFNKGL  +EC +   +   E   Q SLRKI  N+IME GA+++V VSVAE
Sbjct: 86  EILDSAIQSHFNKGLAHIECPN--GSGSIEYGGQMSLRKIKHNDIMEAGARVHVAVSVAE 143

Query: 416 TKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 511
           T+ISKRF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 144 TRISKRFDTIPSGTLYPNADEIQYLQRLVKYK 175


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  177 bits (450), Expect = 7e-43
 Identities = 94/152 (61%), Positives = 113/152 (74%)
 Frame = +2

Query: 56  VSNNIAQLGSPKKEIKP*QLLSLPAFPAKLQHPLPGRNLGGHYGQPSHVTAVTWLKYYFD 235
           VSNNIAQLGSPK+  K  QLLSLP FP    +PLPG+N  G  G+ +HVTA+ W+KYYFD
Sbjct: 33  VSNNIAQLGSPKEGPKARQLLSLPPFPG---YPLPGKNQVGVSGESTHVTAIRWVKYYFD 89

Query: 236 EICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINPNEIMEVGAKIYVPVSVAE 415
           EI  S IQSHF KGLVQ+EC         E+   + +RKI   EIME GA+I++PVSVAE
Sbjct: 90  EIQDSQIQSHFRKGLVQVECPQL--GGLDEKGNLKPMRKIRSGEIMETGARIHLPVSVAE 147

Query: 416 TKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 511
            K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 148 MKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  177 bits (450), Expect = 7e-43
 Identities = 94/152 (61%), Positives = 113/152 (74%)
 Frame = +2

Query: 56  VSNNIAQLGSPKKEIKP*QLLSLPAFPAKLQHPLPGRNLGGHYGQPSHVTAVTWLKYYFD 235
           VSNNIAQLGSPK+  K  QLLSLP FP    +PLPG+N  G  G+ +HVTA+ W+KYYFD
Sbjct: 33  VSNNIAQLGSPKEGPKARQLLSLPPFPG---YPLPGKNQVGVSGESTHVTAIRWVKYYFD 89

Query: 236 EICGSVIQSHFNKGLVQMECSDRIDTSKGEQDLQQSLRKINPNEIMEVGAKIYVPVSVAE 415
           EI  S IQSHF KGLVQ+EC         E+   + +RKI   EIME GA+I++PVSVAE
Sbjct: 90  EIQDSQIQSHFRKGLVQVECPQL--GGLDEKGNLKPMRKIRSGEIMETGARIHLPVSVAE 147

Query: 416 TKISKRFNVIPSGTLYPNADEIEYLQRLVMYK 511
            K+++RF+ IPSGTLYPNADEI+YLQRLV YK
Sbjct: 148 MKVARRFDTIPSGTLYPNADEIKYLQRLVKYK 179