BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00026269
         (1204 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi...   608   e-172
ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|2...   596   e-168
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ...   590   e-166
dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]           588   e-165
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar...   588   e-165

>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
            chloroplastic [Vitis vinifera]
            gi|296087770|emb|CBI35026.3| unnamed protein product
            [Vitis vinifera]
          Length = 675

 Score =  608 bits (1568), Expect = e-172
 Identities = 300/362 (82%), Positives = 336/362 (92%)
 Frame = +1

Query: 61   QFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSYN 240
            +++EALS+F+EM EVRCPLDLTTCN+MIDVYGQLDMAKEADRLFWSMR+MGIEP +VSYN
Sbjct: 310  KYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYN 369

Query: 241  TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQSR 420
            TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQ+R
Sbjct: 370  TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNR 429

Query: 421  GVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGHA 600
            G+EPNA+TYSTIISIW KAGKLDRAAMLFQKLR+SG+EIDQVLYQTMIVAYERAGLV HA
Sbjct: 430  GIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHA 489

Query: 601  KRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRN 780
            KRLLHELKRPDNIPRETAITILAGAGRIEEATW+FRQAF  GEVKDI+VFGCMIDL SRN
Sbjct: 490  KRLLHELKRPDNIPRETAITILAGAGRIEEATWVFRQAFDAGEVKDITVFGCMIDLFSRN 549

Query: 781  KKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVFPDEIH 960
            +KH  VIEVF+KMR AGYFPD+  I+ VLNA GKLREFEKA+ IYKEM+EE CVF DE+H
Sbjct: 550  RKHTNVIEVFDKMRGAGYFPDSNVIALVLNACGKLREFEKADAIYKEMEEEGCVFSDEVH 609

Query: 961  FQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDASRISSQRR 1140
            FQMLSLYGA+G+ + V+ LF+RL+SDPN+NK+EL+LVV+SI E R  RL+DAS+I ++ R
Sbjct: 610  FQMLSLYGARGDFQMVDSLFERLDSDPNINKKELHLVVASIYE-RANRLNDASQIMNRMR 668

Query: 1141 ER 1146
            ER
Sbjct: 669  ER 670



 Score =  115 bits (287), Expect = 3e-23
 Identities = 74/334 (22%), Positives = 162/334 (48%), Gaps = 4/334 (1%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSY 237
            +Q+  A  +F EM++     D  T + +I  +G+  M   A      M +  +  ++V Y
Sbjct: 169  KQWELAHGLFEEMRQRALAPDRYTYSTLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLY 228

Query: 238  NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQS 417
            + L+ +  +   + +AI +F  ++R  I  ++V YN+MI ++GK+    +A  L+ EM++
Sbjct: 229  SNLIELSRKLCDYSKAISIFSRLKRSGISPDLVAYNSMINVFGKAKLFREARLLLPEMRA 288

Query: 418  RGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGH 597
             GV P+ V+YST++S++ + GK   A  +F ++      +D      MI  Y +  +   
Sbjct: 289  GGVMPDTVSYSTLLSMYVENGKYVEALSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKE 348

Query: 598  AKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMID 765
            A RL   +++    P  +   T + +   A    EA  +FR    +   +++  +  MI 
Sbjct: 349  ADRLFWSMRKMGIEPGIVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 408

Query: 766  LLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVF 945
            +  ++ +H     + ++M+  G  P+AI+ S +++ + K  + ++A +++++++      
Sbjct: 409  IYGKSLEHEKATNLVQEMQNRGIEPNAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEI 468

Query: 946  PDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 1047
               ++  M+  Y   G +   + L   L+   N+
Sbjct: 469  DQVLYQTMIVAYERAGLVAHAKRLLHELKRPDNI 502



 Score =  101 bits (251), Expect = 4e-19
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 10/304 (3%)
 Frame = +1

Query: 163  DMAKEADRLFWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 342
            D  +    L W        P+V +YN ++R    A+ +  A  LF  M+++ +  +  TY
Sbjct: 134  DWQRSLALLDWINEEASYSPSVFAYNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTY 193

Query: 343  NTMIKIYGKSLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRT 522
            +T+I  +GK    + A + +Q+M+   V  + V YS +I +  K     +A  +F +L+ 
Sbjct: 194  STLITHFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKR 253

Query: 523  SGVEIDQVLYQTMIVAYERAGLVGHAKRLLHELK----RPDNIPRETAITILAGAGRIEE 690
            SG+  D V Y +MI  + +A L   A+ LL E++     PD +   T +++    G+  E
Sbjct: 254  SGISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVE 313

Query: 691  ATWIFRQAFIEGEVK---DISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQ 861
            A  +F +     EV+   D++    MID+  +         +F  MR  G  P  +S + 
Sbjct: 314  ALSVFSEM---NEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNT 370

Query: 862  VLNAYGKLREFEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES-- 1035
            +L  YG+   F +A  +++ MQ +        +  M+ +YG     E    L   +++  
Sbjct: 371  LLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRG 430

Query: 1036 -DPN 1044
             +PN
Sbjct: 431  IEPN 434


>ref|XP_002324029.1| predicted protein [Populus trichocarpa] gi|222867031|gb|EEF04162.1|
            predicted protein [Populus trichocarpa]
          Length = 629

 Score =  596 bits (1537), Expect = e-168
 Identities = 293/359 (81%), Positives = 329/359 (91%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSY 237
            ++F+EALS+F EM E +CPLDLTTCN+MIDVYGQLDMAKEADRLFWSMR+MGIEPNVVSY
Sbjct: 261  EKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSY 320

Query: 238  NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQS 417
            NTLLRVYGE ELFGEAIHLFRLMQ+KDIEQNVVTYNTMIK+YGKSLEHEKATNL+QEMQ+
Sbjct: 321  NTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQN 380

Query: 418  RGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGH 597
            RG+EPNA+TYSTIISIW KAGKLDRAAMLFQKLR+SGVEIDQVLYQTMIVAYER+GLV H
Sbjct: 381  RGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAH 440

Query: 598  AKRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSR 777
            AKRLLHELK PD+IPRETAI ILA AGRIEEATW+FRQAF  GEVKDISVFGCM+DL SR
Sbjct: 441  AKRLLHELKHPDSIPRETAIKILARAGRIEEATWVFRQAFDAGEVKDISVFGCMVDLFSR 500

Query: 778  NKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVFPDEI 957
            N+K A VIEVFEKMR AGYFPD+  I+ VLNAYGKL EFEKA+ +YKEMQEE CVFPDE+
Sbjct: 501  NRKPANVIEVFEKMRGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQEEECVFPDEV 560

Query: 958  HFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDASRISSQ 1134
            HFQMLSLYGA+ +   +E LF+RL+SDPN+NK+EL+LVV+SI E RK RL+DASRI ++
Sbjct: 561  HFQMLSLYGARKDFMMIEALFERLDSDPNINKKELHLVVASIYE-RKNRLNDASRIMNR 618



 Score =  115 bits (288), Expect = 2e-23
 Identities = 78/365 (21%), Positives = 178/365 (48%), Gaps = 6/365 (1%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFW--SMRRMGIEPNVV 231
            +Q+  A  +F EM+      D  T + +I  +G+  M   +  LFW   M +  +  ++V
Sbjct: 121  KQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDAS--LFWLQQMEQDRVSGDLV 178

Query: 232  SYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEM 411
             Y+ L+ +  +   + +AI +F  ++R  I  ++V YN+MI ++GK+    +A  L++EM
Sbjct: 179  LYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGKAKLFREAKLLMKEM 238

Query: 412  QSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLV 591
            +  GV P+ V+YST++S++ +  K   A  +F ++  +   +D      MI  Y +  + 
Sbjct: 239  REVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMA 298

Query: 592  GHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCM 759
              A RL   +++    P+ +   T + +        EA  +FR    +   +++  +  M
Sbjct: 299  KEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQKKDIEQNVVTYNTM 358

Query: 760  IDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERC 939
            I +  ++ +H     + ++M+  G  P+AI+ S +++ +GK  + ++A +++++++    
Sbjct: 359  IKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGV 418

Query: 940  VFPDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDAS 1119
                 ++  M+  Y   G +   + L   L+   ++ +     +++     R  R+++A+
Sbjct: 419  EIDQVLYQTMIVAYERSGLVAHAKRLLHELKHPDSIPRETAIKILA-----RAGRIEEAT 473

Query: 1120 RISSQ 1134
             +  Q
Sbjct: 474  WVFRQ 478



 Score = 99.0 bits (245), Expect = 2e-18
 Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
 Frame = +1

Query: 220  PNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNL 399
            P+V +YN +LR    A+ +  A  LF  M+ + +  +  TY+T+I  +GK+   + +   
Sbjct: 105  PSVFAYNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYSTLITHFGKAGMFDASLFW 164

Query: 400  VQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYER 579
            +Q+M+   V  + V YS +I +  K     +A  +F +L+ SG+  D V Y +MI  + +
Sbjct: 165  LQQMEQDRVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRSGIMPDLVAYNSMINVFGK 224

Query: 580  AGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISV 747
            A L   AK L+ E++     PD +   T +++     +  EA  +F +        D++ 
Sbjct: 225  AKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEALSVFAEMNEAKCPLDLTT 284

Query: 748  FGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVL-------------------- 867
               MID+  +         +F  MR  G  P+ +S + +L                    
Sbjct: 285  CNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLLRVYGETELFGEAIHLFRLMQ 344

Query: 868  ---------------NAYGKLREFEKAEIIYKEMQEERCVFPDEIHFQ-MLSLYGAQGNL 999
                             YGK  E EKA  + +EMQ  R + P+ I +  ++S++G  G L
Sbjct: 345  KKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQ-NRGIEPNAITYSTIISIWGKAGKL 403

Query: 1000 EAVEMLFDRLES 1035
            +   MLF +L S
Sbjct: 404  DRAAMLFQKLRS 415


>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297316573|gb|EFH46996.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 680

 Score =  590 bits (1522), Expect = e-166
 Identities = 291/367 (79%), Positives = 331/367 (90%)
 Frame = +1

Query: 61   QFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSYN 240
            +F+EALS+F EMKEV CPLDLTTCNIMIDVYGQLDM KEADRLFWS+R+M IEPNVVSYN
Sbjct: 312  KFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 371

Query: 241  TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQSR 420
            T+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK++EHEKATNLVQEMQSR
Sbjct: 372  TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 431

Query: 421  GVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGHA 600
            G+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVLYQTMIVAYER GL+GHA
Sbjct: 432  GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHA 491

Query: 601  KRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRN 780
            KRLLHELK PDNIPRETAITILA AG  EEATW+FRQAF  GEVKDISVFGCMI+L SRN
Sbjct: 492  KRLLHELKLPDNIPRETAITILAKAGSTEEATWVFRQAFESGEVKDISVFGCMINLYSRN 551

Query: 781  KKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVFPDEIH 960
            +++  VIEVFEKMR AGYFPD+ +I+ VLNAYGK REFEKA+ +Y+EMQEE CVFPDE+H
Sbjct: 552  QRYVNVIEVFEKMRTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVH 611

Query: 961  FQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDASRISSQRR 1140
            FQMLSLY ++ + E VE LF+RLESDPNVN +EL+LVV+++ E R  +L+DASR+ ++ R
Sbjct: 612  FQMLSLYSSKKDFEMVESLFERLESDPNVNSKELHLVVAALYE-RADKLNDASRVMNRMR 670

Query: 1141 ERLLAEP 1161
            ER + +P
Sbjct: 671  ERGILKP 677



 Score =  126 bits (316), Expect = 1e-26
 Identities = 83/334 (24%), Positives = 164/334 (49%), Gaps = 4/334 (1%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSY 237
            +QF  A  +F EM++     D  T + +I  +G+  M   A      M +  +  ++V Y
Sbjct: 171  KQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 230

Query: 238  NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQS 417
            + L+ +      + +AI +F  ++R  I  ++V YN+MI +YGK+   ++A  L++EM  
Sbjct: 231  SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNE 290

Query: 418  RGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGH 597
             GV PN V+YST++S++ +  K   A  +F +++     +D      MI  Y +  +V  
Sbjct: 291  AGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKE 350

Query: 598  AKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEGEVKDISVFGCMID 765
            A RL   L++ D  P   +  TIL   G  E   EA  +FR    +   +++  +  MI 
Sbjct: 351  ADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 410

Query: 766  LLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVF 945
            +  +  +H     + ++M++ G  P+AI+ S +++ +GK  + ++A  ++++++      
Sbjct: 411  IYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEI 470

Query: 946  PDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 1047
               ++  M+  Y   G +   + L   L+   N+
Sbjct: 471  DQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 504



 Score = 99.4 bits (246), Expect = 2e-18
 Identities = 74/301 (24%), Positives = 136/301 (45%), Gaps = 7/301 (2%)
 Frame = +1

Query: 163  DMAKEADRLFWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 342
            D  +    L W        P+V +YN +LR    A+ FG A  LF  M+++ +  +  TY
Sbjct: 136  DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTY 195

Query: 343  NTMIKIYGKSLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRT 522
            +T+I  +GK    + A + +Q+M+   V  + V YS +I +  +     +A  +F +L+ 
Sbjct: 196  STLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 255

Query: 523  SGVEIDQVLYQTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEE 690
            SG+  D V Y +MI  Y +A L   A+ L+ E+      P+ +   T +++     +  E
Sbjct: 256  SGITPDLVAYNSMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLE 315

Query: 691  ATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLN 870
            A  +F +        D++    MID+  +         +F  +R     P+ +S + +L 
Sbjct: 316  ALSVFAEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 375

Query: 871  AYGKLREFEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DP 1041
             YG+   F +A  +++ MQ +        +  M+ +YG     E    L   ++S   +P
Sbjct: 376  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEP 435

Query: 1042 N 1044
            N
Sbjct: 436  N 436


>dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
          Length = 546

 Score =  588 bits (1515), Expect = e-165
 Identities = 291/367 (79%), Positives = 329/367 (89%)
 Frame = +1

Query: 61   QFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSYN 240
            +F+EALS+F EMKEV C LDLTTCNIMIDVYGQLDM KEADRLFWS+R+M IEPNVVSYN
Sbjct: 178  KFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 237

Query: 241  TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQSR 420
            T+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK++EHEKATNLVQEMQSR
Sbjct: 238  TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 297

Query: 421  GVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGHA 600
            G+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVLYQTMIVAYER GL+GHA
Sbjct: 298  GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHA 357

Query: 601  KRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRN 780
            KRLLHELK PDNIPRETAITILA AGR EEATW+FRQAF  GEVKDISVFGCMI+L SRN
Sbjct: 358  KRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRN 417

Query: 781  KKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVFPDEIH 960
            +++  VIEVFEKMR AGYFPD+  I+ VLNAYGK REFEKA+ +Y+EMQEE CVFPDE+H
Sbjct: 418  QRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVH 477

Query: 961  FQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDASRISSQRR 1140
            FQMLSLY ++ + E VE LF RLESDPNVN +EL+LVV+++ E R  +L+DASR+ ++ R
Sbjct: 478  FQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYE-RADKLNDASRVMNRMR 536

Query: 1141 ERLLAEP 1161
            ER + +P
Sbjct: 537  ERGILKP 543



 Score =  125 bits (313), Expect = 3e-26
 Identities = 83/334 (24%), Positives = 163/334 (48%), Gaps = 4/334 (1%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSY 237
            +QF  A  +F EM++     D  T + +I  +G+  M   A      M +  +  ++V Y
Sbjct: 37   KQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 96

Query: 238  NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQS 417
            + L+ +      + +AI +F  ++R  I  ++V YN+MI +YGK+    +A  L++EM  
Sbjct: 97   SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNE 156

Query: 418  RGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGH 597
             GV PN V+YST++S++ +  K   A  +F +++     +D      MI  Y +  +V  
Sbjct: 157  AGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKE 216

Query: 598  AKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEGEVKDISVFGCMID 765
            A RL   L++ D  P   +  TIL   G  E   EA  +FR    +   +++  +  MI 
Sbjct: 217  ADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 276

Query: 766  LLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVF 945
            +  +  +H     + ++M++ G  P+AI+ S +++ +GK  + ++A  ++++++      
Sbjct: 277  IYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEI 336

Query: 946  PDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 1047
               ++  M+  Y   G +   + L   L+   N+
Sbjct: 337  DQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 370



 Score = 97.8 bits (242), Expect = 5e-18
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 7/301 (2%)
 Frame = +1

Query: 163  DMAKEADRLFWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 342
            D  +    L W        P+V +YN +LR    A+ F  A  LF  M+++ +  +  TY
Sbjct: 2    DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTY 61

Query: 343  NTMIKIYGKSLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRT 522
            +T+I  +GK    + A + +Q+M+   V  + V YS +I +  +     +A  +F +L+ 
Sbjct: 62   STLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 121

Query: 523  SGVEIDQVLYQTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEE 690
            SG+  D V Y +MI  Y +A L   A+ L+ E+      P+ +   T +++     +  E
Sbjct: 122  SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 181

Query: 691  ATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLN 870
            A  +F +        D++    MID+  +         +F  +R     P+ +S + +L 
Sbjct: 182  ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 241

Query: 871  AYGKLREFEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DP 1041
             YG+   F +A  +++ MQ +        +  M+ +YG     E    L   ++S   +P
Sbjct: 242  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEP 301

Query: 1042 N 1044
            N
Sbjct: 302  N 302


>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g39980, chloroplastic; Flags: Precursor
            gi|10176990|dbj|BAB10222.1| unnamed protein product
            [Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 678

 Score =  588 bits (1515), Expect = e-165
 Identities = 291/367 (79%), Positives = 329/367 (89%)
 Frame = +1

Query: 61   QFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSYN 240
            +F+EALS+F EMKEV C LDLTTCNIMIDVYGQLDM KEADRLFWS+R+M IEPNVVSYN
Sbjct: 310  KFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYN 369

Query: 241  TLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQSR 420
            T+LRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGK++EHEKATNLVQEMQSR
Sbjct: 370  TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 429

Query: 421  GVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGHA 600
            G+EPNA+TYSTIISIW KAGKLDRAA LFQKLR+SGVEIDQVLYQTMIVAYER GL+GHA
Sbjct: 430  GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHA 489

Query: 601  KRLLHELKRPDNIPRETAITILAGAGRIEEATWIFRQAFIEGEVKDISVFGCMIDLLSRN 780
            KRLLHELK PDNIPRETAITILA AGR EEATW+FRQAF  GEVKDISVFGCMI+L SRN
Sbjct: 490  KRLLHELKLPDNIPRETAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRN 549

Query: 781  KKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVFPDEIH 960
            +++  VIEVFEKMR AGYFPD+  I+ VLNAYGK REFEKA+ +Y+EMQEE CVFPDE+H
Sbjct: 550  QRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVH 609

Query: 961  FQMLSLYGAQGNLEAVEMLFDRLESDPNVNKRELNLVVSSIVEKRKKRLDDASRISSQRR 1140
            FQMLSLY ++ + E VE LF RLESDPNVN +EL+LVV+++ E R  +L+DASR+ ++ R
Sbjct: 610  FQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYE-RADKLNDASRVMNRMR 668

Query: 1141 ERLLAEP 1161
            ER + +P
Sbjct: 669  ERGILKP 675



 Score =  125 bits (313), Expect = 3e-26
 Identities = 83/334 (24%), Positives = 163/334 (48%), Gaps = 4/334 (1%)
 Frame = +1

Query: 58   QQFIEALSIFTEMKEVRCPLDLTTCNIMIDVYGQLDMAKEADRLFWSMRRMGIEPNVVSY 237
            +QF  A  +F EM++     D  T + +I  +G+  M   A      M +  +  ++V Y
Sbjct: 169  KQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLY 228

Query: 238  NTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQS 417
            + L+ +      + +AI +F  ++R  I  ++V YN+MI +YGK+    +A  L++EM  
Sbjct: 229  SNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNE 288

Query: 418  RGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRTSGVEIDQVLYQTMIVAYERAGLVGH 597
             GV PN V+YST++S++ +  K   A  +F +++     +D      MI  Y +  +V  
Sbjct: 289  AGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKE 348

Query: 598  AKRLLHELKRPDNIPRETAI-TILAGAGRIE---EATWIFRQAFIEGEVKDISVFGCMID 765
            A RL   L++ D  P   +  TIL   G  E   EA  +FR    +   +++  +  MI 
Sbjct: 349  ADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIK 408

Query: 766  LLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLNAYGKLREFEKAEIIYKEMQEERCVF 945
            +  +  +H     + ++M++ G  P+AI+ S +++ +GK  + ++A  ++++++      
Sbjct: 409  IYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEI 468

Query: 946  PDEIHFQMLSLYGAQGNLEAVEMLFDRLESDPNV 1047
               ++  M+  Y   G +   + L   L+   N+
Sbjct: 469  DQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNI 502



 Score = 97.8 bits (242), Expect = 5e-18
 Identities = 73/301 (24%), Positives = 135/301 (44%), Gaps = 7/301 (2%)
 Frame = +1

Query: 163  DMAKEADRLFWSMRRMGIEPNVVSYNTLLRVYGEAELFGEAIHLFRLMQRKDIEQNVVTY 342
            D  +    L W        P+V +YN +LR    A+ F  A  LF  M+++ +  +  TY
Sbjct: 134  DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTY 193

Query: 343  NTMIKIYGKSLEHEKATNLVQEMQSRGVEPNAVTYSTIISIWAKAGKLDRAAMLFQKLRT 522
            +T+I  +GK    + A + +Q+M+   V  + V YS +I +  +     +A  +F +L+ 
Sbjct: 194  STLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKR 253

Query: 523  SGVEIDQVLYQTMIVAYERAGLVGHAKRLLHELKR----PDNIPRETAITILAGAGRIEE 690
            SG+  D V Y +MI  Y +A L   A+ L+ E+      P+ +   T +++     +  E
Sbjct: 254  SGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLE 313

Query: 691  ATWIFRQAFIEGEVKDISVFGCMIDLLSRNKKHAGVIEVFEKMRAAGYFPDAISISQVLN 870
            A  +F +        D++    MID+  +         +F  +R     P+ +S + +L 
Sbjct: 314  ALSVFAEMKEVNCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVSYNTILR 373

Query: 871  AYGKLREFEKAEIIYKEMQEERCVFPDEIHFQMLSLYGAQGNLEAVEMLFDRLES---DP 1041
             YG+   F +A  +++ MQ +        +  M+ +YG     E    L   ++S   +P
Sbjct: 374  VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEP 433

Query: 1042 N 1044
            N
Sbjct: 434  N 434